PDB: 8717 件ウェブページステータス検索Chemie searchBIRD

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6FS9	Influenza B/Memphis/13/03 endonuclease with I38T mutation with bound inhibitor, baloxavir acid (BXA) 分子名称: Baloxavir acid, CHLORIDE ION, MANGANESE (II) ION, ... 著者 Cusack, S, Speranzini, V. 登録日 2018-02-19 公開日 2018-07-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil. Sci Rep, 8, 2018
7QWJ	Crystal structure of Glc7 phosphatase 分子名称: MANGANESE (II) ION, PHOSPHATE ION, Serine/threonine-protein phosphatase PP1-2 著者 Malhotra, K, Carminati, M, Bertolotti, A, Bellini, D. 登録日 2022-01-25 公開日 2023-02-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of Glc7 phosphatase To Be Published
1JFI	Crystal Structure of the NC2-TBP-DNA Ternary Complex 分子名称: 5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3', TATA-BOX-BINDING PROTEIN (TBP), ... 著者 Kamada, K, Shu, F, Chen, H, Malik, S, Stelzer, G, Roeder, R.G, Meisterernst, M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2001-06-20 公開日 2001-07-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. Cell(Cambridge,Mass.), 106, 2001
6BCD	Crystal structure of Rev7-K44A/R124A/A135D in complex with Rev3-RBM2 (residues 1988-2014) 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. 登録日 2017-10-20 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BC8	Crystal structure of Rev7-R124A/Rev3-RBM2 (residues 1988-2014) complex 分子名称: ACETATE ION, DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B, ... 著者 Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. 登録日 2017-10-20 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BI7	Crystal structure of Rev7-WT/Rev3 as a monomer under high-salt conditions 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Rizzo, A.A, Korzhnev, D.M, Hao, B, Li, Y. 登録日 2017-11-01 公開日 2018-08-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6GIS	Structural basis of human clamp sliding on DNA 分子名称: DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3'), Proliferating cell nuclear antigen 著者 De March, M, Merino, N, Barrera-Vilarmau, S, Crehuet, R, Onesti, S, Blanco, F.J, De Biasio, A. 登録日 2018-05-15 公開日 2018-05-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Structural basis of human PCNA sliding on DNA. Nat Commun, 8, 2017
6Y7Y	Fragments KCL_771 and KCL_802 in complex with MAP kinase p38-alpha 分子名称: (2-azanyl-2-adamantyl)methanol, 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE, 6-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]pyridine-3-sulfonamide, ... 著者 De Nicola, G.F, Nichols, C.E. 登録日 2020-03-02 公開日 2020-03-11 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
7K5I	SARS-COV-2 nsp1 in complex with human 40S ribosome 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Wang, L, Shi, M, Wu, H. 登録日 2020-09-16 公開日 2020-10-14 最終更新日 2021-03-17 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism. Biorxiv, 2020
3EVD	Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine 分子名称: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE 著者 Thompson, A.A, Geiss, B.J, Peersen, O.B. 登録日 2008-10-13 公開日 2009-01-06 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Analysis of flavivirus NS5 methyltransferase cap binding. J.Mol.Biol., 385, 2009
2JZ3	SOCS box elonginBC ternary complex 分子名称: Suppressor of cytokine signaling 3, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2 著者 Babon, J.J, Sabo, J, Soetopo, A, Yao, S, Bailey, M.F, Zhang, J, Nicola, N.A, Norton, R.S. 登録日 2007-12-27 公開日 2008-09-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase J.Mol.Biol., 381, 2008
6FS8	Influenza B/Memphis/13/03 endonuclease with bound inhibitor, baloxavir acid (BXA) 分子名称: Baloxavir acid, MANGANESE (II) ION, Polymerase acidic protein 著者 Cusack, S, Speranzini, V. 登録日 2018-02-19 公開日 2018-07-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil. Sci Rep, 8, 2018
7V2W	protomer structure from the dimer of yeast THO complex 分子名称: Protein TEX1, THO complex subunit 2, THO complex subunit HPR1, ... 著者 Chen, C, Tan, M, Wu, Z, Wu, J, Lei, M. 登録日 2021-08-10 公開日 2022-07-27 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex. Sci Bull (Beijing), 66, 2021
6R0C	Human-D02 Nucleosome Core Particle with biotin-streptavidin label 分子名称: DNA (142-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Pye, V.E, Wilson, M.D, Cherepanov, P, Costa, A. 登録日 2019-03-12 公開日 2019-09-25 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
7UQJ	Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ATPgS and histone H3 tail in state II 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7, Histone H3, ... 著者 Wang, F, Feng, X, Li, H. 登録日 2022-04-19 公開日 2023-02-01 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly. J.Biol.Chem., 299, 2022
5FGP	Crystal structure of D. melanogaster Pur-alpha repeat I-II in complex with DNA. 分子名称: CG1507-PB, isoform B, CHLORIDE ION, ... 著者 Weber, J, Janowski, R, Niessing, D. 登録日 2015-12-21 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha. Elife, 5, 2016
1F66	2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z 分子名称: HISTONE H2A.Z, HISTONE H2B, HISTONE H3, ... 著者 Suto, R.K, Clarkson, M.J, Tremethick, D.J, Luger, K. 登録日 2000-06-20 公開日 2000-11-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat.Struct.Biol., 7, 2000
3KQN	Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation Mechanism 分子名称: 5'-D(*TP*TP*TP*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... 著者 Gu, M, Rice, C.M. 登録日 2009-11-17 公開日 2010-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism. Proc.Natl.Acad.Sci.USA, 107, 2010
3KQU	Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation Mechanism 分子名称: 5'-D(*T*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... 著者 Gu, M, Rice, C.M. 登録日 2009-11-17 公開日 2010-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Inaugural Article: Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism. Proc.Natl.Acad.Sci.USA, 107, 2010
7XGC	Crystal structure of influenza polymerase acidic subunit N-terminal domain crystallized by ammonium sulfate with glycan 分子名称: MANGANESE (II) ION, Polymerase acidic protein, SULFATE ION 著者 Guo, Y, Hoshino, T. 登録日 2022-04-04 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Influence of Glycan Agents on Protein Crystallization with Ammonium Sulfate Cryst.Growth Des., 2022
4KRF	Structure of Human Argonaute-1 let-7 complex 分子名称: Protein argonaute-1, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*UP*U)-3') 著者 Faehnle, C.R, Elkayam, E, Joshua-Tor, L. 登録日 2013-05-16 公開日 2013-06-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 The making of a slicer: activation of human argonaute-1. Cell Rep, 3, 2013
1YN6	Crystal structure of a mouse MHC class I protein, H2-Db, in complex with a peptide from the influenza A acid polymerase 分子名称: 10-mer peptide from RNA-directed RNA polymerase subunit P2, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ... 著者 Turner, S.J, Kedzierska, K, Komodromou, H, La Gruta, N.L, Dunstone, M.A, Webb, A.I, Webby, R, Walden, H, Xie, W, McCluskey, J, Purcell, A.W, Rossjohn, J, Doherty, P.C. 登録日 2005-01-23 公開日 2005-06-28 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8+ T cell populations Nat.Immunol., 6, 2005
4LFI	Crystal structure of scCK2 alpha in complex with GMPPNP 分子名称: Casein kinase II subunit alpha, GLYCEROL, MANGANESE (II) ION, ... 著者 Liu, H. 登録日 2013-06-27 公開日 2014-03-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway. Acta Crystallogr.,Sect.D, 70, 2014
1HRH	CRYSTAL STRUCTURE OF THE RIBONUCLEASE H DOMAIN OF HIV-1 REVERSE TRANSCRIPTASE 分子名称: RIBONUCLEASE H 著者 Davies /II, J.F, Matthews, D.A. 登録日 1991-03-06 公開日 1992-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase. Science, 252, 1991
7PRD	Solution structure of the chimeric Nrd1-Nab3 heterodimerization domains 分子名称: Protein NRD1,HLJ1_G0022400.mRNA.1.CDS.1 著者 Chaves-Arquero, B, Martinez-Lumbreras, S, Perez-Canadillas, J.M. 登録日 2021-09-21 公開日 2022-01-12 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural basis of Nrd1-Nab3 heterodimerization. Life Sci Alliance, 5, 2022

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