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PDB: 50 results

6SAF
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BU of 6saf by Molmil
The Fk1 domain of FKBP51 in complex with (S)-(R)-3-(3,4-dimethoxyphenyl)-1-(3-(2-morpholinoethoxy)phenyl)propyl 1-((1R,4aR,8aR)-4-oxodecahydronaphthalene-1-carbonyl)piperidine-2-carboxylate
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, [(1~{R})-3-(3,4-dimethoxyphenyl)-1-[3-(2-morpholin-4-ylethoxy)phenyl]propyl] (2~{S})-1-[[(1~{R},4~{a}~{R},8~{a}~{R})-4-oxidanylidene-2,3,4~{a},5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-1-yl]carbonyl]piperidine-2-carboxylate
Authors:Feng, X, Sippel, C, Knaup, F, Bracher, A, Staibano, S, Romano, M.F, Hausch, F.
Deposit date:2019-07-16
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A Novel Decalin-Based Bicyclic Scaffold for FKBP51-Selective Ligands.
J.Med.Chem., 63, 2020
8DTP
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BU of 8dtp by Molmil
Close state of T4 bacteriophage gp41 hexamer bound with single strand DNA
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DnaB-like replicative helicase, MAGNESIUM ION, ...
Authors:Feng, X, Li, H.
Deposit date:2022-07-26
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DWJ
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BU of 8dwj by Molmil
Primase of mutant bacteriophage T4 primosome with single strand DNA/RNA primer hybrid in primer exiting state
Descriptor: DNA (70-MER), DNA primase, RNA(5'-ppp-GCCGA-3'), ...
Authors:Feng, X, Li, H.
Deposit date:2022-08-01
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DUE
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BU of 8due by Molmil
Open state of T4 bacteriophage gp41 hexamer bound with single strand DNA
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DnaB-like replicative helicase, MAGNESIUM ION, ...
Authors:Feng, X, Li, H.
Deposit date:2022-07-27
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DVF
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BU of 8dvf by Molmil
T4 Bacteriophage primosome with single strand DNA, state 1
Descriptor: DNA (5'-D(P*GP*GP*CP*TP*G)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA primase, ...
Authors:Feng, X, Li, H.
Deposit date:2022-07-28
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DW6
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BU of 8dw6 by Molmil
T4 bacteriophage primosome with single-strand DNA, State 3
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (70-MER), DNA primase, ...
Authors:Feng, X, Li, H.
Deposit date:2022-07-31
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DUO
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BU of 8duo by Molmil
DNA-free T4 Bacteriophage gp41 hexamer
Descriptor: DnaB-like replicative helicase, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Feng, X, Li, H.
Deposit date:2022-07-27
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8DVI
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BU of 8dvi by Molmil
T4 bacteriophage primosome with single strand DNA, State 2
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (70-MER), DNA primase, ...
Authors:Feng, X, Li, H.
Deposit date:2022-07-29
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
7T2R
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BU of 7t2r by Molmil
Structure of electron bifurcating Ni-Fe hydrogenase complex HydABCSL in FMN-free apo state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Feng, X, Li, H.
Deposit date:2021-12-06
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and electron transfer pathways of an electron-bifurcating NiFe-hydrogenase.
Sci Adv, 8, 2022
7T30
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BU of 7t30 by Molmil
Structure of electron bifurcating Ni-Fe hydrogenase complex HydABCSL in FMN/NAD(H) bound state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Feng, X, Li, H.
Deposit date:2021-12-06
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and electron transfer pathways of an electron-bifurcating NiFe-hydrogenase.
Sci Adv, 8, 2022
8GAO
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BU of 8gao by Molmil
bacteriophage T4 stalled primosome with mutant gp41-E227Q
Descriptor: DNA (70-mer), DNA primase, DnaB-like replicative helicase, ...
Authors:Feng, X, Li, H.
Deposit date:2023-02-23
Release date:2023-06-07
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8G0Z
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BU of 8g0z by Molmil
Mutant bacteriophage T4 gp41 helicase hexamer bound with single strand DNA and ATPgammaS in the stalled primosome
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DnaB-like replicative helicase, MAGNESIUM ION, ...
Authors:Feng, X, Li, H.
Deposit date:2023-02-01
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
5DIT
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BU of 5dit by Molmil
The Fk1 domain of FKBP51 in complex with the new synthetic ligand (1R)-3-(3,4-dimethoxyphenyl)-1-f3-[2-(morpholin-4-yl)ethoxy]phenylgpropyl(2S)-1-[(2S,3R)-2-cyclohexyl-3-hydroxybutanoyl]piperidine-2-carboxylate
Descriptor: (1R)-3-(3,4-dimethoxyphenyl)-1-{3-[2-(morpholin-4-yl)ethoxy]phenyl}propyl (2S)-1-[(2S,3R)-2-cyclohexyl-3-hydroxybutanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Feng, X, Sippel, C, Bracher, A, Hausch, F.
Deposit date:2015-09-01
Release date:2015-10-14
Last modified:2015-10-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-Affinity Relationship Analysis of Selective FKBP51 Ligands.
J.Med.Chem., 58, 2015
7KOE
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BU of 7koe by Molmil
Electron bifurcating flavoprotein Fix/EtfABCX
Descriptor: Electron transfer flavoprotein, alpha subunit, beta subunit, ...
Authors:Feng, X, Li, H.
Deposit date:2020-11-08
Release date:2021-01-20
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryoelectron microscopy structure and mechanism of the membrane-associated electron-bifurcating flavoprotein Fix/EtfABCX.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MCA
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BU of 7mca by Molmil
Structure of the S. cerevisiae origin recognition complex bound to the replication initiator Cdc6 and the ARS1 origin DNA.
Descriptor: Cell division control protein 6, DNA (85-MER), MAGNESIUM ION, ...
Authors:Feng, X, Li, H.
Deposit date:2021-04-01
Release date:2021-06-02
Last modified:2021-08-04
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6.
Nat Commun, 12, 2021
4ONC
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BU of 4onc by Molmil
Crystal Structure of Mycobacterium Tuberculosis Decaprenyl Diphosphate Synthase in Complex with BPH-640
Descriptor: Decaprenyl diphosphate synthase, [hydroxy(1,1':3',1''-terphenyl-3-yl)methanediyl]bis(phosphonic acid)
Authors:Feng, X, Chan, H.C, Ko, T.P.
Deposit date:2014-01-28
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure and Inhibition of Tuberculosinol Synthase and Decaprenyl Diphosphate Synthase from Mycobacterium tuberculosis
J.Am.Chem.Soc., 136, 2014
6LJH
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BU of 6ljh by Molmil
Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua in complex with NAD+
Descriptor: Alcohol dehydrogenase 1, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Feng, X, Fan, S, Li, M, Zou, S, Lv, G, Wu, G, Jin, Y, Yang, Z.
Deposit date:2019-12-16
Release date:2020-12-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua in complex with NAD+
To Be Published
7CYI
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BU of 7cyi by Molmil
Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua
Descriptor: Alcohol dehydrogenase 1, ZINC ION
Authors:Feng, X, Fan, S, Lv, G, Li, M, Wu, G, Jin, Y, Yang, Z.
Deposit date:2020-09-03
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua
To Be Published
4Z2Z
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BU of 4z2z by Molmil
New crystal structure of yeast Ddi1 aspartyl protease reveals substrate engagement mode
Descriptor: DNA damage-inducible protein 1
Authors:Trempe, J.-F, Feng, X, Gehring, K.
Deposit date:2015-03-30
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family.
Sci Rep, 6, 2016
7UQJ
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BU of 7uqj by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ATPgS and histone H3 tail in state II
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7, Histone H3, ...
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7UQK
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BU of 7uqk by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7UQI
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BU of 7uqi by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7X9Q
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BU of 7x9q by Molmil
Crystal structure of human STING complexed with compound BSP16
Descriptor: (2R)-4-(5,6-dimethoxy-1-benzoselenophen-2-yl)-2-ethyl-4-oxidanylidene-butanoic acid, Stimulator of interferon genes protein
Authors:Pan, L, Guan, X, Feng, X, Li, Z, Bian, J.
Deposit date:2022-03-15
Release date:2022-09-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Selenium-Containing STING Agonists as Orally Available Antitumor Agents.
J.Med.Chem., 65, 2022
7X9P
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BU of 7x9p by Molmil
Crystal structure of human STING complexed with compound BSP17
Descriptor: 4-[6-methoxy-5-[3-[[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzoselenophen-5-yl]oxy]propoxy]-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid, Stimulator of interferon genes protein
Authors:Pan, L, Guan, X, Feng, X, Li, Z, Bian, J.
Deposit date:2022-03-15
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery of Selenium-containing STING agonists as orally available anti tumor agents
To be published
5DIV
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BU of 5div by Molmil
The Fk1 domain of FKBP51 in complex with the new synthetic ligand (S)-N-(1-carbamoylcyclopentyl)-1-((S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl)piperidine-2-carboxamide
Descriptor: (2S)-N-(1-carbamoylcyclopentyl)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl]piperidine-2-carboxamide, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Gaali, S, Feng, X, Sippel, C, Bracher, A, Hausch, F.
Deposit date:2015-09-01
Release date:2016-03-23
Last modified:2016-04-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Rapid, Structure-Based Exploration of Pipecolic Acid Amides as Novel Selective Antagonists of the FK506-Binding Protein 51.
J.Med.Chem., 59, 2016

 

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