Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3Q0V
DownloadVisualize
BU of 3q0v by Molmil
ETHR From mycobacterium tuberculosis in complex with compound bdm31369
Descriptor: 4-methyl-1-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}pentan-1-one, HTH-type transcriptional regulator EthR
Authors:Flipo, M, Desroses, M, Dirie, B, Carette, X, Leroux, F, Lens, Z, Rucktooa, P, Leroux, F, Piveteau, C, Demirkaya, F, Locht, C, Villeret, V, Christophe, T, Jeon, H.K, Brodin, P, Deprez, B, Baulard, A, Willand, N.
Deposit date:2010-12-16
Release date:2012-01-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design, synthesis and optimization of new EthR inhibitors. A new alternative approach to fight tuberculosis by boosting ethionamide
To be Published
5HPB
DownloadVisualize
BU of 5hpb by Molmil
human dihydrofolate reductase complex with NADPH and 5-methyl-6-(phenylthio-4'trifluoromethyl)thieno[2,3-d]pyrimidine-2,4-diamine
Descriptor: 5-methyl-6-{[4-(trifluoromethyl)phenyl]sulfanyl}thieno[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Cody, V, Ganjee, A.
Deposit date:2016-01-20
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Human dihydrofolate reductase ternary complex with a series offluorine substituted 5-methyl-6-phenythio)thieno[2,3-d]pyrimidine-2,4-diamines
To Be Published
5HS9
DownloadVisualize
BU of 5hs9 by Molmil
Crystal structure of the quinone-bound YodB from B. subtilis
Descriptor: HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HVE
DownloadVisualize
BU of 5hve by Molmil
5-methyl-6-(3'-trifluromethoxyphenylthio)[2,3-d]pyrimidine 2,4-diamine
Descriptor: 5-methyl-6-{[3-(trifluoromethoxy)phenyl]sulfanyl}thieno[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cody, V.
Deposit date:2016-01-28
Release date:2017-02-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Human dihydrofolate reductase ternary complex with a series of fluorine substituted 5-methyl-6-(4'-methoxyphenythio)[2,3-d]pyrrolo-7-ethyl-2,4-diamines
To Be Published
5HSR
DownloadVisualize
BU of 5hsr by Molmil
Fluorine substituted 5-methyl-6-(3',4'-difluoromethoxyphenythio)thieno[2,3-d]pyrimidine-2,4-diamine
Descriptor: 5-methyl-6-[(2,3,4-trifluorophenyl)sulfanyl]thieno[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cody, V.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Human dihydrofolate reductase ternary complex with a series of fluorine substituted 5-methyl-6-phenythio)thieno[2,3-d]pyrimidine-2,4-diamines
To Be Published
5HUI
DownloadVisualize
BU of 5hui by Molmil
6-substituted pyrido[3,2-d]pyrimidine--6-4'-trifluoromethoxyphenyl)
Descriptor: Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, N~6~-methyl-N~6~-[4-(trifluoromethoxy)phenyl]pyrido[3,2-d]pyrimidine-2,4,6-triamine, ...
Authors:Cody, V.
Deposit date:2016-01-27
Release date:2017-02-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Human dihydrofolate reductase ternary complex with a series of 6-substituted pyrido[3,2]pyrimidine-6-(4'-trifluoromethoxypheny)-2,4-diamines
To Be Published
5FFZ
DownloadVisualize
BU of 5ffz by Molmil
S. aureus MepR bound to ethidium bromide
Descriptor: ETHIDIUM, MarR family regulatory protein, POTASSIUM ION
Authors:Birukou, I, Newman, C.E, Brennan, R.G.
Deposit date:2015-12-19
Release date:2016-12-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.585 Å)
Cite:S. aureus MepR bound to ethidium bromide
To Be Published
8G57
DownloadVisualize
BU of 8g57 by Molmil
Structure of nucleosome-bound Sirtuin 6 deacetylase
Descriptor: DNA strand 1, DNA strand 2, Histone H2A type 1-B/E, ...
Authors:Chio, U.S, Rechiche, O, Bryll, A.R, Zhu, J, Feldman, J.L, Peterson, C.L, Tan, S, Armache, J.-P.
Deposit date:2023-02-11
Release date:2023-04-26
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Cryo-EM structure of the human Sirtuin 6-nucleosome complex.
Sci Adv, 9, 2023
5EB1
DownloadVisualize
BU of 5eb1 by Molmil
the YfiB-YfiR complex
Descriptor: SULFATE ION, YfiB, YfiR
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5DV4
DownloadVisualize
BU of 5dv4 by Molmil
Crystal structure of human CNOT6L in complex with neomycin
Descriptor: CCR4-NOT transcription complex subunit 6-like, NEOMYCIN, SULFATE ION
Authors:Zhang, Q, Bartlam, M.
Deposit date:2015-09-21
Release date:2016-10-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for inhibition of the deadenylase activity of human CNOT6L
Febs Lett., 590, 2016
2KVH
DownloadVisualize
BU of 2kvh by Molmil
Structure of the three-Cys2His2 domain of mouse testis zinc finger protein
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 32
Authors:Chou, C.-C, Lou, Y.-C, Chen, C.
Deposit date:2010-03-15
Release date:2010-04-14
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein.
Proteins, 78, 2010
2KVF
DownloadVisualize
BU of 2kvf by Molmil
Structure of the three-Cys2His2 domain of mouse testis zinc finger protein
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 32
Authors:Chou, C.-C, Lou, Y.-C, Chen, C.
Deposit date:2010-03-15
Release date:2010-04-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein.
Proteins, 78, 2010
3R6S
DownloadVisualize
BU of 3r6s by Molmil
Crystal structure of GlxR transcription factor from Corynebacterium glutamicum with cAMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, HEXANE-1,6-DIOL, transcription regulator
Authors:Jungwirth, B, Pojer, F.
Deposit date:2011-03-22
Release date:2012-03-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of GlxR transcription factor from Corynebacterium glutamicum with cAMP
To be Published
2GRM
DownloadVisualize
BU of 2grm by Molmil
Crystal structure of PrgX/iCF10 complex
Descriptor: PrgX, peptide
Authors:Shi, K, Kozlowicz, B.K, Gu, Z.Y, Ohlendorf, D.H, Earhart, C.A, Dunny, G.M.
Deposit date:2006-04-24
Release date:2007-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular basis for control of conjugation by bacterial pheromone and inhibitor peptides.
Mol.Microbiol., 62, 2006
5FB2
DownloadVisualize
BU of 5fb2 by Molmil
S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide
Descriptor: DNA (5'-D(*CP*GP*TP*TP*A)-3'), GLYCEROL, MarR family regulatory protein
Authors:Birukou, I, Newman, C.E, Brennan, R.G.
Deposit date:2015-12-13
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide
To Be Published
5FCT
DownloadVisualize
BU of 5fct by Molmil
Mouse thymidylate synthase in ternary complex with FdUMP and methylenetetrahydrofolate.
Descriptor: 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, Thymidylate synthase
Authors:Dowiercial, A, Wilk, P, Jarmula, A, Rode, W.
Deposit date:2015-12-15
Release date:2016-10-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Mouse thymidylate synthase does not show the inactive conformation, observed for the human enzyme
Struct Chem, 2016
5F12
DownloadVisualize
BU of 5f12 by Molmil
WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE)
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H dehydrogenase (quinone)
Authors:Degtjarik, O, Brynda, J, Ettrichova, O, Kuta Smatanova, I, Carey, J, Ettrich, R.
Deposit date:2015-11-29
Release date:2016-05-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Quantum Calculations Indicate Effective Electron Transfer between FMN and Benzoquinone in a New Crystal Structure of Escherichia coli WrbA.
J.Phys.Chem.B, 120, 2016
6WNH
DownloadVisualize
BU of 6wnh by Molmil
Menin bound to inhibitor M-808
Descriptor: Menin, methyl [(1S,2R)-2-{(1S)-2-(azetidin-1-yl)-1-(3-fluorophenyl)-1-[1-({1-[4-({1-[4-(piperidin-1-yl)butanoyl]azetidin-3-yl}sulfonyl)phenyl]azetidin-3-yl}methyl)piperidin-4-yl]ethyl}cyclopentyl]carbamate, praseodymium triacetate
Authors:Stuckey, J.A.
Deposit date:2020-04-22
Release date:2020-05-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of M-808 as a Highly Potent, Covalent, Small-Molecule Inhibitor of the Menin-MLL Interaction with StrongIn VivoAntitumor Activity.
J.Med.Chem., 63, 2020
5F6F
DownloadVisualize
BU of 5f6f by Molmil
S. aureus MepR G34R Mutant
Descriptor: MarR family regulatory protein
Authors:Newman, C.E, Birukou, I, Brennan, R.G.
Deposit date:2015-12-05
Release date:2016-12-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:S. aureus MepR G34R Mutant
To Be Published
3NU0
DownloadVisualize
BU of 3nu0 by Molmil
Design, Synthesis, Biological Evaluation and X-ray Crystal Structure of Novel Classical 6,5,6-TricyclicBenzo[4,5]thieno[2,3-d]pyrimidines as Dual Thymidylate Synthase and Dihydrofolate Reductase Inhibitors
Descriptor: (2S)-2-(5-{[(2-amino-4-oxo-3,4-dihydro[1]benzothieno[2,3-d]pyrimidin-5-yl)methyl]amino}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)pentanedioic acid, Dihydrofolate reducatase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Cody, V.
Deposit date:2010-07-06
Release date:2011-05-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Design, synthesis, biological evaluation and X-ray crystal structure of novel classical 6,5,6-tricyclic benzo[4,5]thieno[2,3-d]pyrimidines as dual thymidylate synthase and dihydrofolate reductase inhibitors.
Bioorg.Med.Chem., 19, 2011
5IWH
DownloadVisualize
BU of 5iwh by Molmil
Structure of P. vulgaris HigB toxin delta H92
Descriptor: CHLORIDE ION, Endoribonuclease HigB
Authors:Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
Deposit date:2016-03-22
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.101 Å)
Cite:Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5IXL
DownloadVisualize
BU of 5ixl by Molmil
Structure of P. vulgaris HigB toxin Y91A variant
Descriptor: CHLORIDE ION, Endoribonuclease HigB
Authors:Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
Deposit date:2016-03-23
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
3NXY
DownloadVisualize
BU of 3nxy by Molmil
Preferential Selection of Isomer Binding from Chiral Mixtures: Alernate Binding Modes Observed fro the E- and Z-isomers of a Series of 5-Substituted 2,4-Diaminofuro[2,3-d]pyrimidines as Ternary Complexes with NADPH and Human Dihydrofolate Reductase
Descriptor: 5-[(1E,3R)-2-(2-methoxyphenyl)-3-methylpent-1-en-1-yl]furo[2,3-d]pyrimidine-2,4-diamine, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Cody, V.
Deposit date:2010-07-14
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Preferential selection of isomer binding from chiral mixtures: alternate binding modes observed for the E and Z isomers of a series of 5-substituted 2,4-diaminofuro[2,3-d]pyrimidines as ternary complexes with NADPH and human dihydrofolate reductase.
Acta Crystallogr.,Sect.D, 66, 2010
1OC3
DownloadVisualize
BU of 1oc3 by Molmil
HUMAN PEROXIREDOXIN 5
Descriptor: BENZOIC ACID, PEROXIREDOXIN 5
Authors:Evrard, C, Declercq, J.-P.
Deposit date:2003-02-05
Release date:2004-02-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Dimeric Oxidized Form of Human Peroxiredoxin 5
J.Mol.Biol., 337, 2004
3PHT
DownloadVisualize
BU of 3pht by Molmil
Crystal structure of H74A mutant of Helicobacter Pylori NikR
Descriptor: NICKEL (II) ION, Putative nickel-responsive regulator
Authors:Pozharski, E, Evans, S, Michel, S.
Deposit date:2010-11-04
Release date:2011-11-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long-range effect.
Proc.Natl.Acad.Sci.USA, 109, 2012

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon