Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2QUJ
DownloadVisualize
BU of 2quj by Molmil
Crystal structures of human tryptophanyl-tRNA synthetase in complex with TrpAMP
Descriptor: CHLORIDE ION, GLYCEROL, TRYPTOPHAN, ...
Authors:Shen, N, Ding, J.P.
Deposit date:2007-08-05
Release date:2008-04-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
Nucleic Acids Res., 36, 2008
2RIH
DownloadVisualize
BU of 2rih by Molmil
CBS domain protein PAE2072 from Pyrobaculum aerophilum
Descriptor: ACETIC ACID, Conserved protein with 2 CBS domains, SULFATE ION
Authors:Lee, T.M, King, N.P, Sawaya, M.R, Cascio, D, Yeates, T.O.
Deposit date:2007-10-10
Release date:2008-06-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures and Functional Implications of an AMP-Binding Cystathionine beta-Synthase Domain Protein from a Hyperthermophilic Archaeon
J.Mol.Biol., 380, 2008
5GTD
DownloadVisualize
BU of 5gtd by Molmil
o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis in Complex with the Acyl-adenylate Intermediate OSB-AMP
Descriptor: 2-SUCCINYLBENZOATE, 2-succinylbenzoate--CoA ligase, ADENOSINE MONOPHOSPHATE, ...
Authors:Chen, Y, Guo, Z.
Deposit date:2016-08-20
Release date:2017-01-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Mechanistic Insights from the Crystal Structure of Bacillus subtilis o-Succinylbenzoyl-CoA Synthetase Complexed with the Adenylate Intermediate
Biochemistry, 55, 2016
6ANG
DownloadVisualize
BU of 6ang by Molmil
Crystal structure of PPK2 Class III in the complex with AMP from Cytophaga hutchinsonii ATCC 33406
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Polyphosphate:AMP phosphotransferase
Authors:Nocek, B, Joachimiak, A, Yakunin, A.
Deposit date:2017-08-13
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases
Acs Catalysis, 8, 2018
6ZZ9
DownloadVisualize
BU of 6zz9 by Molmil
Crystal structure of CbpB from Streptococcus agalactiae
Descriptor: CBS domain-containing protein, PLATINUM (II) ION, SULFATE ION
Authors:Mechaly, A.E, Covaleda-Cortes, G, Kaminski, P.A.
Deposit date:2020-08-04
Release date:2021-08-18
Last modified:2023-03-01
Method:X-RAY DIFFRACTION (2.644 Å)
Cite:The c-di-AMP-binding protein CbpB modulates the level of ppGpp alarmone in Streptococcus agalactiae.
Febs J., 2023
6BKG
DownloadVisualize
BU of 6bkg by Molmil
Human LigIV catalytic domain with bound DNA-adenylate intermediate in closed conformation
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Moon, A.F, Tumbale, P.P, Schellenberg, M.J, Williams, R.S, Williams, J.G, Kunkel, T.A, Pedersen, L.C, Bebenek, B.
Deposit date:2017-11-08
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structures of DNA-bound human ligase IV catalytic core reveal insights into substrate binding and catalysis.
Nat Commun, 9, 2018
6GYX
DownloadVisualize
BU of 6gyx by Molmil
Crystal structure of DacA from Staphylococcus aureus in complex with ApCpp
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Diadenylate cyclase, MANGANESE (II) ION
Authors:Tosi, T, Freemont, P.S, Grundling, A.
Deposit date:2018-07-02
Release date:2019-01-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Inhibition of the Staphylococcus aureus c-di-AMP cyclase DacA by direct interaction with the phosphoglucosamine mutase GlmM.
PLoS Pathog., 15, 2019
5SXS
DownloadVisualize
BU of 5sxs by Molmil
Crystal structure of catalase-peroxidase KatG with isonicotinic acid hydrazide and AMP bound
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE MONOPHOSPHATE, ...
Authors:Loewen, P.C.
Deposit date:2016-08-10
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.887 Å)
Cite:Isonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases.
J. Biol. Chem., 285, 2010
4CFH
DownloadVisualize
BU of 4cfh by Molmil
Structure of an active form of mammalian AMPK
Descriptor: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1, 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2, 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1, ...
Authors:Xiao, B, Sanders, M.J, Underwood, E, Heath, R, Mayer, F, Carmena, D, Jing, C, Walker, P.A, Eccleston, J.F, Haire, L.F, Saiu, P, Howell, S.A, Aasland, R, Martin, S.R, Carling, D, Gamblin, S.J.
Deposit date:2013-11-18
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structure of Mammalian Ampk and its Regulation by Adp
Nature, 472, 2011
1ECJ
DownloadVisualize
BU of 1ecj by Molmil
ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 AMP PER TETRAMER
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE
Authors:Muchmore, C.R, Krahn, J.M, Smith, J.L.
Deposit date:1997-07-16
Release date:1998-04-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of glutamine phosphoribosylpyrophosphate amidotransferase from Escherichia coli.
Protein Sci., 7, 1998
3DAE
DownloadVisualize
BU of 3dae by Molmil
Crystal structure of phosphorylated SNF1 kinase domain
Descriptor: Carbon catabolite-derepressing protein kinase
Authors:Zheng, L.-S, Chen, L, Jiao, Z.-H, Wu, J.-W.
Deposit date:2008-05-29
Release date:2009-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:Structural insight into the autoinhibition mechanism of AMP-activated protein kinase
Nature, 459, 2009
5K8F
DownloadVisualize
BU of 5k8f by Molmil
Crystal structure of Acetyl-CoA Synthetase in complex with ATP and Acetyl-AMP from Cryptococcus neoformans H99
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Acetyl-coenzyme A synthetase, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fox III, D, Delker, S.L, Potts, K.T, Lorimer, D.D, Edwards, T.E, Mutz, M.W.
Deposit date:2016-05-30
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of Acetyl-CoA Synthetase in complex with ATP and Acetyl-AMP from Cryptococcus neoformans H99
To Be Published
7NQU
DownloadVisualize
BU of 7nqu by Molmil
Plasmodium falciparum Hsp70-x chaperone nucleotide binding domain in complex with Z396380540
Descriptor: AMP PHOSPHORAMIDATE, CHLORIDE ION, GLYCEROL, ...
Authors:Mohamad, N, O'Donoghue, A, Kantsadi, A.L, Vakonakis, I.
Deposit date:2021-03-02
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structures of P. falciparum Hsp70-x nucleotide binding domain with small molecule ligands
To Be Published
7BX2
DownloadVisualize
BU of 7bx2 by Molmil
The solution NMR structure of VV14 peptide in the presence of Deuterated SDS micelle.
Descriptor: VAL-LYS-TRP-VAL-LYS-LYS-VAL-VAL-LYS-TRP-VAL-LYS-LYS-VAL
Authors:Bhunia, A, Mohid, S.A, Chowdhury, N.
Deposit date:2020-04-16
Release date:2021-04-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Effect of Secondary Structure and Side Chain Length of Hydrophobic Amino Acid Residues on the Antimicrobial Activity and Toxicity of 14-Residue-Long de novo AMPs.
Chemmedchem, 16, 2021
3SF0
DownloadVisualize
BU of 3sf0 by Molmil
Structure of Recombinant Haemophilus Influenzae e(P4) Acid Phosphatase mutant D64N complexed with 5'AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Lipoprotein E, MAGNESIUM ION
Authors:Singh, H.
Deposit date:2011-06-12
Release date:2011-09-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis of the inhibition of class C acid phosphatases by adenosine 5'-phosphorothioate.
Febs J., 278, 2011
3SPL
DownloadVisualize
BU of 3spl by Molmil
Crystal structure of aprataxin ortholog Hnt3 in complex with DNA and AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Aprataxin-like protein, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*GP*AP*G)-3'), ...
Authors:Gong, Y, Zhu, D, Ding, J, Dou, C, Ren, X, Jiang, T, Wang, D.
Deposit date:2011-07-02
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA
Nat.Struct.Mol.Biol., 18, 2011
7D2F
DownloadVisualize
BU of 7d2f by Molmil
Lp major histidine acid phosphatase mutant D281A/5'-AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Major acid phosphatase
Authors:Guo, Y, Teng, Y.
Deposit date:2020-09-16
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into a new substrate binding mode of a histidine acid phosphatase from Legionella pneumophila.
Biochem.Biophys.Res.Commun., 540, 2021
5X0J
DownloadVisualize
BU of 5x0j by Molmil
Free serine kinase (E30Q mutant) in complex with phosphoserine and AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase, MAGNESIUM ION, ...
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0F
DownloadVisualize
BU of 5x0f by Molmil
Free serine kinase (E30A mutant) in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0K
DownloadVisualize
BU of 5x0k by Molmil
Free serine kinase (E30Q mutant) in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
3TV1
DownloadVisualize
BU of 3tv1 by Molmil
Crystal structure of RtcA.AMP product complex
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Chakravarty, A.K, Smith, P, Shuman, S.
Deposit date:2011-09-19
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of RNA 3'-phosphate cyclase bound to ATP reveal the mechanism of nucleotidyl transfer and metal-assisted catalysis.
Proc.Natl.Acad.Sci.USA, 108, 2011
2GXS
DownloadVisualize
BU of 2gxs by Molmil
HERA N-terminal domain in complex with AMP, crystal form 2
Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, GLYCEROL, ...
Authors:Rudolph, M.G, Klostermeier, D.
Deposit date:2006-05-09
Release date:2006-08-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal Structure and Nucleotide Binding of the Thermus thermophilus RNA Helicase Hera N-terminal Domain.
J.Mol.Biol., 351, 2006
6V8A
DownloadVisualize
BU of 6v8a by Molmil
Human CtBP1 (28-375) in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, C-terminal-binding protein 1, CALCIUM ION, ...
Authors:Royer, W.E.
Deposit date:2019-12-10
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:NAD(H) phosphates mediate tetramer assembly of human C-terminal binding protein (CtBP).
J.Biol.Chem., 296, 2021
6FCL
DownloadVisualize
BU of 6fcl by Molmil
Crystal Structure of Human APRT wild type in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2017-12-20
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Insights into the Forward and Reverse Enzymatic Reactions in Human Adenine Phosphoribosyltransferase.
Cell Chem Biol, 25, 2018
6FD6
DownloadVisualize
BU of 6fd6 by Molmil
Crystal Structure of Human APRT-Tyr105Phe variant in complex with Adenine, PRPP and Mg2+, 30 days post crystallization (with AMP and PPi products fully generated)
Descriptor: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase, MAGNESIUM ION, ...
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2017-12-21
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insights into the Forward and Reverse Enzymatic Reactions in Human Adenine Phosphoribosyltransferase.
Cell Chem Biol, 25, 2018

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon