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1M5R
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BU of 1m5r by Molmil
Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', ...
Authors:Lariviere, L, Morera, S.
Deposit date:2002-07-10
Release date:2002-12-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Base-flipping mechanism for the T4 phage beta-glucosyltransferase and identification of a transition state analog
J.Mol.Biol., 324, 2002
6Q90
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BU of 6q90 by Molmil
Structure of human galactokinase 1 bound with 1-(4-Methoxyphenyl)-3-(4-pyridinyl)urea
Descriptor: 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one, Galactokinase, N-(4-methoxyphenyl)-N'-pyridin-4-ylurea, ...
Authors:Mackinnon, S.R, Bezerra, G.A, Zhang, M, Foster, W, Krojer, T, Brandao-Neto, J, Douangamath, A, Arrowsmith, C, Edwards, A, Bountra, C, Brennan, P, Lai, K, Yue, W.W.
Deposit date:2018-12-16
Release date:2019-01-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of human galactokinase 1 bound with 1-(4-Methoxyphenyl)-3-(4-pyridinyl)urea
To Be Published
9B5L
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BU of 9b5l by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Polyubiquitin, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway
To be published
9B5H
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BU of 9b5h by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Large ribosomal subunit protein eL40B, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway
To be published
9BQV
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BU of 9bqv by Molmil
DdmD dimer apoprotein
Descriptor: Helicase/UvrB N-terminal domain-containing protein
Authors:Bravo, J.P.K, Taylor, D.W.
Deposit date:2024-05-10
Release date:2024-07-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Plasmid targeting and destruction by the DdmDE bacterial defence system.
Nature, 630, 2024
9BD3
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BU of 9bd3 by Molmil
Structure of the MAGEA4 MHD-RAD18 R6BD Complex
Descriptor: E3 ubiquitin-protein ligase RAD18, Melanoma antigen A 4
Authors:Forker, K, Zhou, P.
Deposit date:2024-04-10
Release date:2024-06-05
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Crystal structure of MAGEA4 MHD-RAD18 R6BD reveals a flipped binding mode compared to AlphaFold2 prediction.
Embo J., 2024
2FN7
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BU of 2fn7 by Molmil
Crystal structure of the lactate dehydrogenase from cryptosporidium parvum complexed with substrate (lactic acid) and cofactor (b-nicotinamide adenine dinucleotide)
Descriptor: GLYCEROL, LACTIC ACID, Lactate Dehydrogenase, ...
Authors:Senkovich, O.A, Chattopadhyay, D.
Deposit date:2006-01-10
Release date:2007-01-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of cryptosporidium parvum lactate dehydrogenase in complex with substrates and cofactors
To be Published
2G3J
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BU of 2g3j by Molmil
Structure of S.olivaceoviridis xylanase Q88A/R275A mutant
Descriptor: PHOSPHATE ION, Xylanase, alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose
Authors:Diertavitian, S, Kaneko, S, Fujimoto, Z, Kuno, A, Johansson, E, Lo Leggio, L.
Deposit date:2006-02-20
Release date:2007-03-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based engineering of glucose specificity in a family 10 xylanase from Streptomyces olivaceoviridis E-86
PROCESS BIOCHEM, 47, 2012
9F9K
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BU of 9f9k by Molmil
Crystal structure of MUS81-EME1 bound by compound 15.
Descriptor: 5-oxidanyl-6-oxidanylidene-2-(4-phenylphenyl)-1H-pyrimidine-4-carboxylic acid, Crossover junction endonuclease EME1, Crossover junction endonuclease MUS81, ...
Authors:Collie, G.W.
Deposit date:2024-05-07
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.728 Å)
Cite:Fragment-Based Discovery of Novel MUS81 Inhibitors
Acs Med.Chem.Lett., 2024
8YTX
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BU of 8ytx by Molmil
Tubulin-RB3-TTL in complex with compound SI9
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-chloranyl-~{N}-(4-methoxyphenyl)-~{N}-methyl-thieno[2,3-d]pyrimidin-4-amine, CALCIUM ION, ...
Authors:Wu, C.Y, Wang, Y.X.
Deposit date:2024-03-26
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Tubulin-RB3-TTL in complex with compound SI9
To Be Published
9BKF
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BU of 9bkf by Molmil
Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
Descriptor: Serine protease 1
Authors:Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
Deposit date:2024-04-27
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of selenomethionine labeled bovine trypsin mutant - S195A solved by Sulphur-SAD at 1A wavelength
To Be Published
3UE9
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BU of 3ue9 by Molmil
Crystal structure of Adenylosuccinate synthetase (AMPSase) (purA) from Burkholderia thailandensis
Descriptor: ACETATE ION, Adenylosuccinate synthetase, CALCIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-10-28
Release date:2011-11-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Combining functional and structural genomics to sample the essential Burkholderia structome.
Plos One, 8, 2013
9B5F
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BU of 9b5f by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway
To be published
8Y7R
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BU of 8y7r by Molmil
Crystal structure of a novel ketoreductase from Sphingobacterium siyangense SY1
Descriptor: NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family)
Authors:Zheng, Z.R, Wei, H.L, Liu, W.D, You, S.
Deposit date:2024-02-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of a novel ketoreductase from Sphingobacterium siyangense SY1
To Be Published
2FO5
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BU of 2fo5 by Molmil
Crystal structure of recombinant barley cysteine endoprotease B isoform 2 (EP-B2) in complex with leupeptin
Descriptor: ACE-LEU-LEU-argininal (leupeptin), Cysteine proteinase EP-B 2, SULFATE ION
Authors:Bethune, M.T, Strop, P, Brunger, A.T, Khosla, C.
Deposit date:2006-01-12
Release date:2006-07-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Heterologous Expression, Purification, Refolding, and Structural-Functional Characterization of EP-B2, a Self-Activating Barley Cysteine Endoprotease.
Chem.Biol., 13, 2006
1MJM
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BU of 1mjm by Molmil
METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO HALF OF THE CONSENSUS OPERATOR SEQUENCE
Descriptor: HALF CONSENSUS DNA OPERATOR DUPLEX, METHIONINE REPRESSOR
Authors:Garvie, C.W, Phillips, S.E.V.
Deposit date:1998-01-30
Release date:1999-08-02
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Direct and indirect readout in mutant Met repressor-operator complexes.
Structure Fold.Des., 8, 2000
9B5I
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BU of 9b5i by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg)
Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway
To be published
9EMB
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BU of 9emb by Molmil
Structure of KefC Asp156Asn variant
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE MONOPHOSPHATE, Glutathione-regulated potassium-efflux system protein KefC
Authors:Gulati, A, Kokane, S, Drew, D.
Deposit date:2024-03-07
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structure of KefC Asp156Asn variant
To Be Published
9EU7
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BU of 9eu7 by Molmil
The FK1 domain of FKBP51 in complex with SAFit-analog 15b
Descriptor: (2-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile.
Chemmedchem, 2024
9BKL
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BU of 9bkl by Molmil
Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
Descriptor: COBALT (II) ION, Rubredoxin
Authors:Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
Deposit date:2024-04-29
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
To Be Published
8Y2H
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BU of 8y2h by Molmil
GK tetramer of AtP5CS1 filament with adjacent hooks, reaction state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Delta-1-pyrroline-5-carboxylate synthase A
Authors:Zhang, T, Guo, C.J, Liu, J.L.
Deposit date:2024-01-26
Release date:2024-06-05
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamic Arabidopsis P5CS filament facilitates substrate channelling.
Nat.Plants, 10, 2024
8ZMU
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BU of 8zmu by Molmil
GLUTAMATE DEHYDROGENASE (W89F-MUTANT) FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGANDED STATE
Descriptor: ACETIC ACID, GLYCEROL, Glutamate dehydrogenase, ...
Authors:Wakabayashi, T, Matsui, Y, Masayoshi, M.
Deposit date:2024-05-23
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.028 Å)
Cite:Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action
To Be Published
9BBE
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BU of 9bbe by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028668
Descriptor: 5-(4-methoxyphenyl)-3-[(3S)-pyrrolidin-3-yl]-1,2,4-oxadiazole, DNA damage-binding protein 1, L(+)-TARTARIC ACID, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028668
To be published
2FR5
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BU of 2fr5 by Molmil
Crystal Structure of Mouse Cytidine Deaminase Complexed with Tetrahydrouridine
Descriptor: Cytidine deaminase, SULFATE ION, TETRAHYDROURIDINE, ...
Authors:Teh, A.H.
Deposit date:2006-01-19
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:The 1.48 A Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse
Biochemistry, 45, 2006
8ZAH
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BU of 8zah by Molmil
Crystal structure of the channel protein CorA from Campylobacter jejuni
Descriptor: Magnesium transport protein CorA, SULFATE ION
Authors:Ahn, S.Y, Yoon, S.I.
Deposit date:2024-04-25
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical analysis of the unique interactions of the Campylobacter jejuni CorA channel protein with divalent cations.
Biochem.Biophys.Res.Commun., 723, 2024

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PDB entries from 2024-07-10

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