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PDB: 110 results

4N14
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BU of 4n14 by Molmil
Crystal structure of Cdc20 and apcin complex
Descriptor: 2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl [(1R)-2,2,2-trichloro-1-(pyrimidin-2-ylamino)ethyl]carbamate, Cell division cycle protein 20 homolog
Authors:Luo, X, Tian, W, Yu, H.
Deposit date:2013-10-03
Release date:2014-08-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Synergistic blockade of mitotic exit by two chemical inhibitors of the APC/C.
Nature, 514, 2014
2ESK
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BU of 2esk by Molmil
Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b, wild-type
Descriptor: Ubiquitin-conjugating enzyme E2 D2
Authors:Ozkan, E, Yu, H, Deisenhofer, J.
Deposit date:2005-10-26
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases
Proc.Natl.Acad.Sci.Usa, 102, 2005
2ESQ
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BU of 2esq by Molmil
Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ser94Gly
Descriptor: Ubiquitin-conjugating enzyme E2 D2
Authors:Ozkan, E, Yu, H, Deisenhofer, J.
Deposit date:2005-10-26
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases
Proc.Natl.Acad.Sci.Usa, 102, 2005
2ESO
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BU of 2eso by Molmil
Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ile37Ala
Descriptor: Ubiquitin-conjugating enzyme E2 D2
Authors:Ozkan, E, Yu, H, Deisenhofer, J.
Deposit date:2005-10-26
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases
Proc.Natl.Acad.Sci.Usa, 102, 2005
2ESP
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BU of 2esp by Molmil
Human ubiquitin-conjugating enzyme (E2) UbcH5b mutant Ile88Ala
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Ubiquitin-conjugating enzyme E2 D2
Authors:Ozkan, E, Yu, H, Deisenhofer, J.
Deposit date:2005-10-26
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Mechanistic insight into the allosteric activation of a ubiquitin-conjugating enzyme by RING-type ubiquitin ligases
Proc.Natl.Acad.Sci.Usa, 102, 2005
4R8Q
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BU of 4r8q by Molmil
Structure and substrate recruitment of the human spindle checkpoint kinase bub1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Mitotic checkpoint serine/threonine-protein kinase BUB1
Authors:Tomchick, D.R, Yu, H.
Deposit date:2014-09-02
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure and substrate recruitment of the human spindle checkpoint kinase Bub1.
Mol.Cell, 32, 2008
5FBY
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BU of 5fby by Molmil
Crystal structure of ctSPD
Descriptor: cleaved peptide, separase
Authors:Lin, Z, Luo, X, Yu, H.
Deposit date:2015-12-14
Release date:2016-03-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Structural basis of cohesin cleavage by separase.
Nature, 532, 2016
4IW2
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BU of 4iw2 by Molmil
HSA-glucose complex
Descriptor: D-glucose, PHOSPHATE ION, Serum albumin, ...
Authors:Wang, Y, Yu, H, Shi, X, Luo, Z, Huang, M.
Deposit date:2013-01-23
Release date:2013-04-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural mechanism of ring-opening reaction of glucose by human serum albumin
J.Biol.Chem., 288, 2013
5FC3
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BU of 5fc3 by Molmil
Structural basis of cohesin cleavage by separase
Descriptor: pAMK peptide, separase
Authors:Lin, Z, Luo, X, Yu, H.
Deposit date:2015-12-14
Release date:2016-03-30
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of cohesin cleavage by separase
Nature, 532, 2016
5FC2
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BU of 5fc2 by Molmil
Structure of a separase in complex with a pAMK peptide containing a phospho-serine
Descriptor: pAMK, peptide containing a phospho-serine, separase
Authors:Lin, Z, Luo, X, Yu, H.
Deposit date:2015-12-14
Release date:2016-03-30
Last modified:2016-05-04
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis of cohesin cleavage by separase.
Nature, 532, 2016
4IW1
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BU of 4iw1 by Molmil
HSA-fructose complex
Descriptor: D-fructose, PHOSPHATE ION, Serum albumin, ...
Authors:Wang, Y, Yu, H, Shi, X, Huang, M.
Deposit date:2013-01-23
Release date:2013-04-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural mechanism of ring-opening reaction of glucose by human serum albumin
J.Biol.Chem., 288, 2013
4FTW
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BU of 4ftw by Molmil
Crystal structure of a carboxyl esterase N110C/L145H at 2.3 angstrom resolution
Descriptor: 3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE, CHLORIDE ION, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID), ...
Authors:Wu, L, Ma, J, Zhou, J, Yu, H.
Deposit date:2012-06-28
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enhanced enantioselectivity of a carboxyl esterase from Rhodobacter sphaeroides by directed evolution.
Appl.Microbiol.Biotechnol., 97, 2013
2IW5
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BU of 2iw5 by Molmil
Structural Basis for CoREST-Dependent Demethylation of Nucleosomes by the Human LSD1 Histone Demethylase
Descriptor: AMMONIUM ION, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yang, M, Gocke, C.B, Luo, X, Borek, D, Tomchick, D.R, Machius, M, Otwinowski, Z, Yu, H.
Deposit date:2006-06-26
Release date:2006-08-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural Basis for Corest-Dependent Demethylation of Nucleosomes by the Human Lsd1 Histone Demethylase
Mol.Cell, 23, 2006
6MDW
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BU of 6mdw by Molmil
Mechanism of protease dependent DPC repair
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CITRATE ANION, ...
Authors:Li, F, Raczynska, J, Chen, Z, Yu, H.
Deposit date:2018-09-05
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan.
Cell Rep, 26, 2019
6MDX
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BU of 6mdx by Molmil
Mechanism of protease dependent DPC repair
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, DNA (5'-D(P*CP*C)-3'), ...
Authors:Li, F, Raczynska, J, Chen, Z, Yu, H.
Deposit date:2018-09-05
Release date:2019-04-10
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan.
Cell Rep, 26, 2019
5ZMO
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BU of 5zmo by Molmil
Sulfur binding domain of ScoMcrA complexed with phosphorothioated DNA
Descriptor: DNA (5'-D(P*CP*CP*GP*(GS)P*CP*CP*GP*G)-3'), PHOSPHATE ION, Uncharacterized protein McrA
Authors:Liu, G, Fu, W, Zhang, Z, He, Y, Yu, H, Zhao, Y, Deng, Z, Wu, G, He, X.
Deposit date:2018-04-04
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural basis for the recognition of sulfur in phosphorothioated DNA.
Nat Commun, 9, 2018
5XS5
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BU of 5xs5 by Molmil
Structure of Coxsackievirus A6 (CVA6) virus procapsid particle
Descriptor: Genome polyprotein
Authors:Zheng, Q.B, He, M.Z, Xu, L.F, Yu, H, Cheng, T, Li, S.W.
Deposit date:2017-06-12
Release date:2017-09-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic structures of Coxsackievirus A6 and its complex with a neutralizing antibody
Nat Commun, 8, 2017
5XS4
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BU of 5xs4 by Molmil
Structure of Coxsackievirus A6 (CVA6) virus A-particle
Descriptor: Genome polyprotein
Authors:Zheng, Q.B, He, M.Z, Xu, L.F, Yu, H, Li, S.W, Cheng, T.
Deposit date:2017-06-12
Release date:2017-09-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Atomic structures of Coxsackievirus A6 and its complex with a neutralizing antibody
Nat Commun, 8, 2017
5XS7
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BU of 5xs7 by Molmil
Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Descriptor: Genome polyprotein, Heavy chain of Fab 1D5, Light chain of Fab 1D5
Authors:Zheng, Q.B, He, M.Z, Xu, L.F, Yu, H, Li, S.W, Cheng, T.
Deposit date:2017-06-12
Release date:2017-09-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic structures of Coxsackievirus A6 and its complex with a neutralizing antibody
Nat Commun, 8, 2017
5Z4D
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BU of 5z4d by Molmil
Structure of Tailor in complex with AGUU RNA
Descriptor: RNA (5'-R(*AP*GP*UP*U)-3'), Terminal uridylyltransferase Tailor
Authors:Cheng, L, Li, F, Jiang, Y, Yu, H, Xie, C, Shi, Y, Gong, Q.
Deposit date:2018-01-11
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor.
Nucleic Acids Res., 47, 2019
5Z4M
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BU of 5z4m by Molmil
Structure of TailorD343A with bound UTP and Mg
Descriptor: MAGNESIUM ION, Terminal uridylyltransferase Tailor, URIDINE 5'-TRIPHOSPHATE
Authors:Cheng, L, Li, F, Jiang, Y, Yu, H, Xie, C, Shi, Y, Gong, Q.
Deposit date:2018-01-11
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor.
Nucleic Acids Res., 47, 2019
5Z4C
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BU of 5z4c by Molmil
Crystal structure of Tailor
Descriptor: Terminal uridylyltransferase Tailor
Authors:Cheng, L, Li, F, Jiang, Y, Yu, H, Xie, C, Shi, Y, Gong, Q.
Deposit date:2018-01-10
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor.
Nucleic Acids Res., 47, 2019
5ZMM
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BU of 5zmm by Molmil
Structure of the Type IV phosphorothioation-dependent restriction endonuclease ScoMcrA
Descriptor: SULFATE ION, Uncharacterized protein McrA, ZINC ION
Authors:Liu, G, Fu, W, Zhang, Z, He, Y, Yu, H, Zhao, Y, Deng, Z, Wu, G, He, X.
Deposit date:2018-04-04
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis for the recognition of sulfur in phosphorothioated DNA.
Nat Commun, 9, 2018
5Z4J
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BU of 5z4j by Molmil
Structure of Tailor in complex with U4 RNA
Descriptor: RNA (5'-R(*UP*UP*UP*U)-3'), Terminal uridylyltransferase Tailor
Authors:Cheng, L, Li, F, Jiang, Y, Yu, H, Xie, C, Shi, Y, Gong, Q.
Deposit date:2018-01-11
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor.
Nucleic Acids Res., 47, 2019
5ZMN
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BU of 5zmn by Molmil
Sulfur binding domain and SRA domain of ScoMcrA complexed with phosphorothioated DNA
Descriptor: DNA (5'-D(*CP*CP*CP*GP*(GS)P*CP*CP*GP*GP*G)-3'), SULFATE ION, Uncharacterized protein McrA
Authors:Liu, G, Fu, W, Zhang, Z, He, Y, Yu, H, Zhao, Y, Deng, Z, Wu, G, He, X.
Deposit date:2018-04-04
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural basis for the recognition of sulfur in phosphorothioated DNA.
Nat Commun, 9, 2018

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