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PDB: 42 results

3WSQ
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BU of 3wsq by Molmil
Structure of HER2 with an Fab
Descriptor: Antibody Heavy Chain, Antibody Light Chain, Receptor tyrosine-protein kinase erbB-2
Authors:Fu, W.Y, Wang, Y.X, Zhou, L.J.
Deposit date:2014-03-20
Release date:2015-03-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Insights into HER2 signaling from step-by-step optimization of anti-HER2 antibodies.
MAbs, 6, 2014
7DO1
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BU of 7do1 by Molmil
Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*G)-3')
Authors:Fu, W.Q, Jing, H.T, Zhang, N.
Deposit date:2020-12-11
Release date:2021-09-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.
Nucleic Acids Res., 49, 2021
5EX0
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BU of 5ex0 by Molmil
Crystal structure of human SMYD3 in complex with a MAP3K2 peptide
Descriptor: ACETIC ACID, Histone-lysine N-methyltransferase SMYD3, MAP3K2 peptide, ...
Authors:Fu, W, Liu, N, Qiao, Q, Wang, M, Min, J, Zhu, B, Xu, R.M, Yang, N.
Deposit date:2015-11-23
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for Substrate Preference of SMYD3, a SET Domain-containing Protein Lysine Methyltransferase
J.Biol.Chem., 291, 2016
8K00
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BU of 8k00 by Molmil
RPA70N-MRE11 fusion
Descriptor: Double-strand break repair protein MRE11, Replication protein A 70 kDa DNA-binding subunit
Authors:Fu, W.M, Wu, Y.Y, Zhou, C.
Deposit date:2023-07-07
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural characterization of human RPA70N association with DNA damage response proteins.
Elife, 12, 2023
8JZY
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BU of 8jzy by Molmil
RPA70N-RAD9 fusion
Descriptor: Cell cycle checkpoint control protein RAD9A, Replication protein A 70 kDa DNA-binding subunit
Authors:Fu, W.M, Wu, Y.Y, Zhou, C.
Deposit date:2023-07-06
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural characterization of human RPA70N association with DNA damage response proteins.
Elife, 12, 2023
8JZV
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BU of 8jzv by Molmil
RPA70N-ETAA1 fusion
Descriptor: Ewing's tumor-associated antigen 1, Replication protein A 70 kDa DNA-binding subunit
Authors:Fu, W.M, Wu, Y.Y, Zhou, C.
Deposit date:2023-07-06
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural characterization of human RPA70N association with DNA damage response proteins.
Elife, 12, 2023
2ALV
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BU of 2alv by Molmil
X-ray structural analysis of SARS coronavirus 3CL proteinase in complex with designed anti-viral inhibitors
Descriptor: N-((3S,6R)-6-((S,E)-4-ETHOXYCARBONYL-1-((S)-2-OXOPYRROLIDIN-3-YL)BUT-3-EN-2-YLCARBAMOYL)-2,9-DIMETHYL-4-OXODEC-8-EN-3-YL)-5-METHYLISOXAZOLE-3-CARBOXAMIDE, Replicase polyprotein 1ab
Authors:Ghosh, A.K, Xi, K, Ratia, K, Santarsiero, B.D, Fu, W, Harcourt, B.H, Rota, P.A, Baker, S.C, Johnson, M.E, Mesecar, A.D.
Deposit date:2005-08-08
Release date:2006-08-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Design and synthesis of peptidomimetic severe acute respiratory syndrome chymotrypsin-like protease inhibitors.
J.Med.Chem., 48, 2005
2W6C
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BU of 2w6c by Molmil
ACHE IN COMPLEX WITH A BIS-(-)-NOR-MEPTAZINOL DERIVATIVE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(3R)-3-ethyl-1-{9-[(3S)-3-ethyl-3-(3-hydroxyphenyl)azepan-1-yl]nonyl}azepan-3-yl]phenol, ...
Authors:Paz, A, Xie, Q, Greenblatt, H.M, Fu, W, Tang, Y, Silman, I, Qiu, Z, Sussman, J.L.
Deposit date:2008-12-18
Release date:2009-04-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:The Crystal Structure of a Complex of Acetylcholinesterase with a Bis-(-)-Nor-Meptazinol Derivative Reveals Disruption of the Catalytic Triad.
J.Med.Chem., 52, 2009
1TX7
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BU of 1tx7 by Molmil
Bovine Trypsin complexed with p-amidinophenylmethylphosphinic acid (AMPA)
Descriptor: (4-CARBAMIMIDOYLPHENYL)-METHYL-PHOSPHINIC ACID, CALCIUM ION, Trypsinogen
Authors:Cui, J, Marankan, F, Fu, W, Crich, D, Mesecar, A, Johnson, M.E.
Deposit date:2004-07-02
Release date:2005-09-20
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An oxyanion-hole selective serine protease inhibitor in complex with trypsin.
Bioorg.Med.Chem., 10, 2002
2JSO
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BU of 2jso by Molmil
Antimicrobial resistance protein
Descriptor: Polymyxin resistance protein pmrD
Authors:Jin, C, Fu, W.
Deposit date:2007-07-10
Release date:2007-09-04
Last modified:2020-02-19
Method:SOLUTION NMR
Cite:First structure of the polymyxin resistance proteins.
Biochem.Biophys.Res.Commun., 361, 2007
8GSC
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BU of 8gsc by Molmil
Echovirus3 A-particle in complex with 6D10 Fab
Descriptor: Heavy chain of 6D10, Light chain of 6D10, VP1, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-09-06
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses, 14, 2022
8GSE
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BU of 8gse by Molmil
Echovirus3 capsid protein in complex with 6D10 Fab (upright)
Descriptor: Heavy chain of 6D10, Light chain of 6D10, VP0, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-09-06
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses, 14, 2022
8GSD
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BU of 8gsd by Molmil
Echovirus3 full particle in complex with 6D10 Fab
Descriptor: Genome polyprotein, Genome polyprotein (Fragment), Heavy chain of 6D10, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-09-06
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses, 14, 2022
8GSF
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BU of 8gsf by Molmil
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Descriptor: Heavy chain of 6D10, Light chain of 6D10, VP0, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-09-06
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses, 14, 2022
2MT9
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BU of 2mt9 by Molmil
Solution structure of holo_FldB
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin-2
Authors:Jin, C, Fu, W, Ye, Q.
Deposit date:2014-08-15
Release date:2016-03-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Long-chain flavodoxin FldB from Escherichia coli
J.Biomol.Nmr, 60, 2014
2MTB
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BU of 2mtb by Molmil
Solution structure of apo_FldB
Descriptor: Flavodoxin-2
Authors:Jin, C, Fu, W, Ye, Q.
Deposit date:2014-08-15
Release date:2016-03-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Long-chain flavodoxin FldB from Escherichia coli
J.Biomol.Nmr, 60, 2014
5EX3
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BU of 5ex3 by Molmil
Crystal structure of human SMYD3 in complex with a VEGFR1 peptide
Descriptor: ACETIC ACID, Histone-lysine N-methyltransferase SMYD3, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Qiao, Q, Fu, W, Liu, N, Wang, M, Min, J, Zhu, B, Xu, R.M, Yang, N.
Deposit date:2015-11-23
Release date:2016-03-09
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.408 Å)
Cite:Structural Basis for Substrate Preference of SMYD3, a SET Domain-containing Protein Lysine Methyltransferase
J.Biol.Chem., 291, 2016
6M05
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BU of 6m05 by Molmil
Trimolecular G-quadruplex
Descriptor: DNA (5'-D(*GP*TP*TP*AP*GP*G)-3')
Authors:Jing, H.T, Fu, W.Q, Zhang, N.
Deposit date:2020-02-20
Release date:2021-01-20
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structural study on the self-trimerization of d(GTTAGG) into a dynamic trimolecular G-quadruplex assembly preferentially in Na+ solution with a moderate K+ tolerance.
Nucleic Acids Res., 49, 2021
7W0X
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BU of 7w0x by Molmil
Tetrameric antiparallel G-quadruplex formed by natural human telomeric sequence
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*A)-3')
Authors:Jing, H.T, Fu, W.Q.
Deposit date:2021-11-18
Release date:2022-01-19
Method:SOLUTION NMR
Cite:NMR structure of an alternating antiparallel tetrameric G-quadruplex assembled by the single-repeat of human telomeric DNA d(GGGTTA)
To Be Published
5ZMM
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BU of 5zmm by Molmil
Structure of the Type IV phosphorothioation-dependent restriction endonuclease ScoMcrA
Descriptor: SULFATE ION, Uncharacterized protein McrA, ZINC ION
Authors:Liu, G, Fu, W, Zhang, Z, He, Y, Yu, H, Zhao, Y, Deng, Z, Wu, G, He, X.
Deposit date:2018-04-04
Release date:2018-09-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis for the recognition of sulfur in phosphorothioated DNA.
Nat Commun, 9, 2018
7WTI
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BU of 7wti by Molmil
SARS-CoV-2 Omicron variant spike in complex with Fab XGv264
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of XGv264, Light chain of XGv264, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022
7WTF
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BU of 7wtf by Molmil
SARS-CoV-2 Omicron variant spike in complex with Fab XGv051
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of XGv051, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022
7WTK
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BU of 7wtk by Molmil
SARS-CoV-2 Omicron variant spike in complex with Fab XGv286
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of XGv286, ...
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022
7WTH
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BU of 7wth by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv264
Descriptor: Heavy chain of XGv264, Light chain of XGv264, Spike protein S1
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022
7WTG
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BU of 7wtg by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv051
Descriptor: Heavy chain of XGv051, Light chain of XGv051, Spike protein S1
Authors:Wang, X, Fu, W.
Deposit date:2022-02-04
Release date:2022-12-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res., 32, 2022

 

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