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PDB: 83 results

5DLL
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BU of 5dll by Molmil
Aminopeptidase N (pepN) from Francisella tularensis subsp. tularensis SCHU S4
Descriptor: Aminopeptidase N, CHLORIDE ION, PHOSPHATE ION, ...
Authors:Borek, D, Raczynska, J, Dubrovska, I, Grimshaw, S, Minasov, G, Shuvalova, L, Kwon, K, Anderson, W.F, Otwinowski, Z, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-09-07
Release date:2015-09-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Aminopeptidase N (pepN) from Francisella tularensis subsp. tularensis SCHU S4
To Be Published
1JN9
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Structure of Putative Asparaginase Encoded by Escherichia coli ybiK Gene
Descriptor: CALCIUM ION, CHLORIDE ION, PUTATIVE L-ASPARAGINASE, ...
Authors:Borek, D, Jaskolski, M.
Deposit date:2001-07-23
Release date:2003-09-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal packing of plant-type L-asparaginase from Escherichia coli.
Acta Crystallogr.,Sect.D, 64, 2008
1K2X
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Crystal structure of putative asparaginase encoded by Escherichia coli ybiK gene
Descriptor: CHLORIDE ION, Putative L-asparaginase, SODIUM ION
Authors:Borek, D, Jaskolski, M.
Deposit date:2001-09-30
Release date:2003-09-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal packing of plant-type L-asparaginase from Escherichia coli.
Acta Crystallogr.,Sect.D, 64, 2008
1JJA
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BU of 1jja by Molmil
CRYSTAL STRUCTURE OF ORTHORHOMBIC FORM OF D90E MUTANT OF ESCHERICHIA COLI L-ASPARAGINASE II
Descriptor: L-ASPARAGINASE II
Authors:Borek, D, Kozak, M, Jaskolski, M.
Deposit date:2001-07-04
Release date:2003-09-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site.
Febs J., 281, 2014
1IHD
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BU of 1ihd by Molmil
Crystal Structure of Trigonal Form of D90E Mutant of Escherichia coli Asparaginase II
Descriptor: L-asparaginase II
Authors:Borek, D, Jaskolski, M.
Deposit date:2001-04-19
Release date:2003-09-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site.
Febs J., 281, 2014
1JAZ
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BU of 1jaz by Molmil
Crystal Structure of Monoclinic Form of D90E Mutant of Escherichia coli Asparaginase II
Descriptor: L-ASPARAGINASE II, ZINC ION
Authors:Borek, D, Kozak, M, Jaskolski, M.
Deposit date:2001-06-01
Release date:2003-09-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site.
Febs J., 281, 2014
1WPB
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BU of 1wpb by Molmil
Structure of Escherichia coli yfbU gene product
Descriptor: CHLORIDE ION, GLYCEROL, hypothetical protein yfbU
Authors:Borek, D, Chen, Y, Zheng, M, Skarina, T, Savchenko, A, Edwards, A, Otwinowski, Z, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-09-01
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Escherichia coli yfbU gene product
To be Published
1U9C
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BU of 1u9c by Molmil
Crystallographic structure of APC35852
Descriptor: APC35852
Authors:Borek, D, Chen, Y, Shao, D, Collart, F, Joachimiak, A, Otwinowski, Z, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-08-09
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural analysis of DJI superfamily
To be Published
1T0B
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BU of 1t0b by Molmil
Structure of ThuA-like protein from Bacillus stearothermophilus
Descriptor: ThuA-like protein, ZINC ION
Authors:Borek, D, Chen, Y, Collart, F, Joachimiak, A, Otwinowski, Z, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-04-08
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Analysis of chemical interactions in ThuA-like protein from Bacillus Stearothermophilus
To be Published
5VGC
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BU of 5vgc by Molmil
Crystal structure of the NleG5-1 effector (C200A) from Escherichia coli O157:H7 str. Sakai
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Borek, D, Valleau, D, Skarina, T, Jobin, M.C, Wawrzak, Z, Anderson, W.F, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-04-10
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the NleG5-1 effector (C200A) from Escherichia coli O157:H7 str. Sakai
To Be Published
1SDI
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BU of 1sdi by Molmil
1.65 A structure of Escherichia coli ycfC gene product
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, Hypothetical protein ycfC
Authors:Borek, D, Otwinowski, Z, Chen, Y, Skarina, T, Savchenko, A, Edwards, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-02-13
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural analysis of Escherichia coli ycfC gene product
To be Published
5V01
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BU of 5v01 by Molmil
Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Descriptor: CHLORIDE ION, Competence damage-inducible protein A, SODIUM ION
Authors:Borek, D, Wawrzak, Z, Grimshaw, S, Sandoval, J, Evdokimova, E, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-28
Release date:2017-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
To Be Published
5VR0
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BU of 5vr0 by Molmil
Crystal structure of glucose isomerase from Streptomyces rubiginosus
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Borek, D, Otwinowski, Z.
Deposit date:2017-05-09
Release date:2018-05-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Real-space analysis of radiation-induced specific changes with independent component analysis.
J Synchrotron Radiat, 25, 2018
5V10
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BU of 5v10 by Molmil
Crystal structure of the putative tol-pal system-associated acyl-CoA thioesterase from Pseudomonas aeruginosa PAO1
Descriptor: CHLORIDE ION, Uncharacterized protein
Authors:Borek, D, Wawrzak, Z, Grimshaw, S, Sandoval, J, Evdokimova, E, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-28
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the putative tol-pal system-associated acyl-CoA thioesterase from Pseudomonas aeruginosa PAO1
To Be Published
4KT7
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BU of 4kt7 by Molmil
The crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548
Descriptor: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, CHLORIDE ION, SODIUM ION
Authors:Borek, D, Tan, K, Stols, L, Eschenfeidt, W.H, Otwinoski, Z, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-05-20
Release date:2013-06-05
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:The crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase from Anaerococcus prevotii DSM 20548
To be Published
5TVL
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BU of 5tvl by Molmil
Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A
Descriptor: CHLORIDE ION, Foldase protein PrsA, GLYCEROL, ...
Authors:Borek, D, Yim, V, Kudritska, M, Wawrzak, Z, Stogios, P.J, Otwinowski, Z, Savchenko, A, Anderson, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-11-09
Release date:2016-11-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A
To Be Published
6M7Z
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BU of 6m7z by Molmil
A divergent kinase lacking the glycine-rich loop regulates membrane ultrastructure of the Toxoplasma parasitophorous vacuole
Descriptor: 1,2-ETHANEDIOL, Bradyzoite pseudokinase 1, CHLORIDE ION
Authors:Beraki, T, Borek, D.M, Reese, M.L.
Deposit date:2018-08-21
Release date:2018-10-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Divergent kinase regulates membrane ultrastructure of theToxoplasmaparasitophorous vacuole.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
8F6C
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BU of 8f6c by Molmil
E. coli cytochrome bo3 ubiquinol oxidase dimer
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
Authors:Guo, Y, Karimullina, E, Borek, D, Savchenko, A.
Deposit date:2022-11-16
Release date:2022-11-30
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Monomer and dimer structures of cytochrome bo 3 ubiquinol oxidase from Escherichia coli.
Protein Sci., 32, 2023
4YPI
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BU of 4ypi by Molmil
Structure of Ebola virus nucleoprotein N-terminal fragment bound to a peptide derived from Ebola VP35
Descriptor: Nucleoprotein, Polymerase cofactor VP35
Authors:Leung, D.W, Borek, D.M, Binning, J.M, Otwinowski, Z, Amarasinghe, G.K, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-03-13
Release date:2015-04-08
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions.
Cell Rep, 11, 2015
8F68
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BU of 8f68 by Molmil
E. coli cytochrome bo3 ubiquinol oxidase monomer
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
Authors:Guo, Y, Karimullina, E, Borek, D, Savchenko, A.
Deposit date:2022-11-16
Release date:2022-11-30
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Monomer and dimer structures of cytochrome bo 3 ubiquinol oxidase from Escherichia coli.
Protein Sci., 32, 2023
4U2X
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BU of 4u2x by Molmil
Ebola virus VP24 in complex with Karyopherin alpha 5 C-terminus
Descriptor: CHLORIDE ION, Importin subunit alpha-6, Membrane-associated protein VP24
Authors:Xu, W, Leung, D, Borek, D, Amarasinghe, G.
Deposit date:2014-07-18
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Ebola Virus VP24 Targets a Unique NLS Binding Site on Karyopherin Alpha 5 to Selectively Compete with Nuclear Import of Phosphorylated STAT1.
Cell Host Microbe, 16, 2014
6VRS
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BU of 6vrs by Molmil
Single particle reconstruction of glucose isomerase from Streptomyces rubiginosus based on data acquired in the presence of substantial aberrations
Descriptor: MANGANESE (II) ION, xylose isomerase
Authors:Bromberg, R, Guo, Y, Borek, D, Otwinowski, Z.
Deposit date:2020-02-09
Release date:2020-02-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:High-resolution cryo-EM reconstructions in the presence of substantial aberrations
Iucrj, 7, 2020
6VSC
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BU of 6vsc by Molmil
Single particle reconstruction of HemQ from Geobacillus based on data acquired in the presence of substantial aberrations
Descriptor: HemQ
Authors:Bromberg, R, Guo, Y, Borek, D, Otwinowski, Z.
Deposit date:2020-02-11
Release date:2020-02-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:High-resolution cryo-EM reconstructions in the presence of substantial aberrations
Iucrj, 7, 2020
6VSA
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BU of 6vsa by Molmil
Single particle reconstruction of HemQ from Geobacillus based on data acquired in the presence of substantial aberrations
Descriptor: HemQ
Authors:Bromberg, R, Guo, Y, Borek, D, Otwinowski, Z.
Deposit date:2020-02-10
Release date:2020-02-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.32 Å)
Cite:High-resolution cryo-EM reconstructions in the presence of substantial aberrations
Iucrj, 7, 2020
4X6Z
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BU of 4x6z by Molmil
Yeast 20S proteasome in complex with PR-VI modulator
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Rostankowski, R, Witkowska, J, Borek, D, Otwinowski, Z, Jankowska, E.
Deposit date:2014-12-09
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures revealed the common place of binding of low-molecular mass activators with the 20S proteasome
To Be Published

 

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