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PDB: 527 results

7NEV
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BU of 7nev by Molmil
Structure of the hemiacetal complex between the SARS-CoV-2 Main Protease and Leupeptin
Descriptor: 3C-like proteinase, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Guenther, S, Reinke, P.Y.A, Oberthuer, D, Yefanov, O, Gelisio, L, Ginn, H.M, Lieske, J, Domaracky, M, Brehm, W, Rahmani Mashhour, A, White, T.A, Knoska, J, Pena Esperanza, G, Koua, F, Tolstikova, A, Groessler, M, Fischer, P, Hennicke, V, Fleckenstein, H, Trost, F, Galchenkova, M, Gevorkov, Y, Li, C, Awel, S, Xavier, P.L, Ullah, N, Andaleeb, H, Falke, S, Alves Franca, B, Schwinzer, M, Brognaro, H, Werner, N, Perbandt, M, Tidow, H, Seychell, B, Beck, T, Meier, S, Zaitsev-Doyle, J.J, Rogers, C, Gieseler, H, Melo, D, Monteiro, D.C.F, Dunkel, I, Lane, T.J, Peck, A, Saouane, S, Hakanpaeae, J, Meyer, J, Noei, H, Gribbon, P, Ellinger, B, Kuzikov, M, Wolf, M, Zhang, L, Ehrt, C, Pletzer-Zelgert, J, Wollenhaupt, J, Feiler, C, Weiss, M, Schluenzen, F, Schulz, E.C, Mehrabi, P, Norton-Baker, B, Schmidt, C, Lorenzen, K, Schubert, R, Sun, X, Han, H, Chari, A, Fernandez Garcia, Y, Turk, D, Hilgenfeld, R, Rarey, M, Zaliani, A, Chapman, H.N, Pearson, A, Betzel, C, Meents, A.
Deposit date:2021-02-05
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease.
Science, 372, 2021
6XI3
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BU of 6xi3 by Molmil
Crystal structure of tetra-tandem repeat in extending region of large adhesion protein
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Ye, Q, Vance, T.D.R, Davies, P.L.
Deposit date:2020-06-19
Release date:2020-10-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Essential role of calcium in extending RTX adhesins to their target.
J Struct Biol X, 4, 2020
6R62
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BU of 6r62 by Molmil
Crystal structure of a class II pyruvate aldolase from Sphingomonas wittichii RW1 in complex with hydroxypyruvate
Descriptor: 3-HYDROXYPYRUVIC ACID, ACETATE ION, BROMIDE ION, ...
Authors:Marsden, S.R, Mestrom, L, Hagedoorn, P.L, Bento, I, McMillan, D.G.G, Hanefeld, U.
Deposit date:2019-03-26
Release date:2019-05-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:CH-Pi Interactions Promote the Conversion of Hydroxypyruvate in a Class II Pyruvate Aldolase
Adv.Synth.Catal., 2019
4P7L
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BU of 4p7l by Molmil
Structure of Escherichia coli PgaB C-terminal domain, P212121 crystal form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
Authors:Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L.
Deposit date:2014-03-27
Release date:2014-07-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
Proc.Natl.Acad.Sci.USA, 111, 2014
3LZ2
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BU of 3lz2 by Molmil
STRUCTURE DETERMINATION OF TURKEY EGG WHITE LYSOZYME USING LAUE DIFFRACTION
Descriptor: TURKEY EGG WHITE LYSOZYME
Authors:Howell, P.L, Almo, S.C, Parsons, M.R, Hajdu, J, Petsko, G.A.
Deposit date:1991-09-13
Release date:1993-10-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure determination of turkey egg-white lysozyme using Laue diffraction data.
Acta Crystallogr.,Sect.B, 48, 1992
3VN3
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BU of 3vn3 by Molmil
Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
Descriptor: 1,2-ETHANEDIOL, Antifreeze protein
Authors:Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S.
Deposit date:2011-12-21
Release date:2012-06-06
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
6E3Z
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BU of 6e3z by Molmil
Structure of Bace-1 in complex with Ligand 8
Descriptor: Beta-secretase 1, N-{3-[(2R,3R)-5-amino-3-methyl-2-(trifluoromethyl)-3,6-dihydro-2H-1,4-oxazin-3-yl]-4-fluorophenyl}-3,5-dichloropyridine-2-carboxamide
Authors:Shaffer, P.L.
Deposit date:2018-07-16
Release date:2019-09-11
Last modified:2020-03-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Discovery and Chemical Development of JNJ-50138803, a Clinical Candidate BACE1 Inhibitor
Acs Symp.Ser., 1307, 2020
7RZY
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BU of 7rzy by Molmil
CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Tn6677 Vibrio cholerae transposon TnsC (VchTnsC)
Authors:Hoffmann, F.T, Kim, M, Beh, L.Y, Wang, J, Vo, P.L.H, Gelsinger, D.R, Acree, C, Mohabir, J.T, Fernandez, I.S, Sternberg, S.H.
Deposit date:2021-08-28
Release date:2022-06-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Selective TnsC recruitment enhances the fidelity of RNA-guided transposition.
Nature, 609, 2022
5WFT
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BU of 5wft by Molmil
PelB 319-436 from Pseudomonas aeruginosa PAO1
Descriptor: PelB
Authors:Marmont, L.S, Howell, P.L.
Deposit date:2017-07-12
Release date:2017-10-04
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.821 Å)
Cite:PelA and PelB proteins form a modification and secretion complex essential for Pel polysaccharide-dependent biofilm formation in Pseudomonas aeruginosa.
J. Biol. Chem., 292, 2017
6LA8
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BU of 6la8 by Molmil
349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0
Descriptor: CALCIUM ION, DNA (349-MER), Histone H1.0, ...
Authors:Adhireksan, Z, Lee, P.L, Sharma, D, Davey, C.A.
Deposit date:2019-11-12
Release date:2020-10-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun, 11, 2020
4WCJ
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BU of 4wcj by Molmil
Structure of IcaB from Ammonifex degensii
Descriptor: CHLORIDE ION, Polysaccharide deacetylase, ZINC ION
Authors:Little, D.J, Bamford, N.C, Pokrovskaya, V, Robinson, H, Nitz, M, Howell, P.L.
Deposit date:2014-09-04
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for the De-N-acetylation of Poly-beta-1,6-N-acetyl-d-glucosamine in Gram-positive Bacteria.
J.Biol.Chem., 289, 2014
4WCX
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BU of 4wcx by Molmil
Crystal structure of HydG: A maturase of the [FeFe]-hydrogenase
Descriptor: ALANINE, Biotin and thiamin synthesis associated, FE (III) ION, ...
Authors:Dinis, P.C, Harmer, J.E, Driesener, R.C, Roach, P.L.
Deposit date:2014-09-05
Release date:2015-02-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:X-ray crystallographic and EPR spectroscopic analysis of HydG, a maturase in [FeFe]-hydrogenase H-cluster assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
2G8E
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BU of 2g8e by Molmil
Calpain 1 proteolytic core in complex with SNJ-1715, a cyclic hemiacetal-type inhibitor
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Calpain-1 catalytic subunit, ...
Authors:Cuerrier, D, Moldoveanu, T, Davies, P.L, Campbell, R.L.
Deposit date:2006-03-02
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Calpain Inhibition by alpha-Ketoamide and Cyclic Hemiacetal Inhibitors Revealed by X-ray Crystallography
Biochemistry, 45, 2006
2GBL
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BU of 2gbl by Molmil
Crystal Structure of Full Length Circadian Clock Protein KaiC with Phosphorylation Sites
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase kaiC, MAGNESIUM ION
Authors:Pattanayek, R, Williams, D.R, Pattanayek, S, Xu, Y, Mori, T, Johnson, C.H, Stewart, P.L, Egli, M.
Deposit date:2006-03-10
Release date:2007-01-23
Last modified:2021-07-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods.
Embo J., 25, 2006
4GOL
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BU of 4gol by Molmil
Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM
Descriptor: DNA adenine methylase, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE
Authors:Harmer, J.E, Roach, P.L.
Deposit date:2012-08-20
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic
To be Published
4GOO
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BU of 4goo by Molmil
Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Benzothiophene Aza-SAM
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl][2-(1-benzothiophen-3-yl)ethyl]amino}-5'-deoxyadenosine, DNA adenine methylase
Authors:Harmer, J.E, Roach, P.L.
Deposit date:2012-08-20
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic
To be published
3K90
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BU of 3k90 by Molmil
The Abscisic acid receptor PYR1 in complex with Abscisic Acid
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, ACETIC ACID, GLYCEROL, ...
Authors:Dupeux, F.D, Santiago, J, Rodriguez, P.L, Marquez, J.A.
Deposit date:2009-10-15
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:The abscisic acid receptor PYR1 in complex with abscisic acid.
Nature, 462, 2009
4U0P
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BU of 4u0p by Molmil
The Crystal Structure of Lipoyl Synthase in Complex with S-Adenosyl Homocysteine
Descriptor: IRON/SULFUR CLUSTER, Lipoyl synthase 2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Harmer, J.E, Hiscox, M.J, Sandy, J, Dinis, P.C, Roach, P.L.
Deposit date:2014-07-13
Release date:2014-08-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.623 Å)
Cite:Structures of lipoyl synthase reveal a compact active site for controlling sequential sulfur insertion reactions.
Biochem.J., 464, 2014
4U0O
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BU of 4u0o by Molmil
Crystal structure of Thermosynechococcus elongatus Lipoyl Synthase 2 complexed with MTA and DTT
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 5'-DEOXY-5'-METHYLTHIOADENOSINE, IRON/SULFUR CLUSTER, ...
Authors:Harmer, J.E, Hiscox, M.J, Dinis, P.C, Sandy, J, Roach, P.L.
Deposit date:2014-07-13
Release date:2014-08-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of lipoyl synthase reveal a compact active site for controlling sequential sulfur insertion reactions.
Biochem.J., 464, 2014
3LGS
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BU of 3lgs by Molmil
A. thaliana MTA nucleosidase in complex with S-adenosylhomocysteine
Descriptor: 1,2-ETHANEDIOL, 5'-methylthioadenosine nucleosidases, ADENINE, ...
Authors:Siu, K.K.W, Howell, P.L.
Deposit date:2010-01-21
Release date:2010-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanism of substrate specificity in 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases.
J.Struct.Biol., 173, 2011
7N4N
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BU of 7n4n by Molmil
BACE-2 in complex with ligand 36
Descriptor: 1,2-ETHANEDIOL, Beta-secretase 2, N-{3-[(2S,5R)-6-amino-2-(fluoromethyl)-5-(methanesulfonyl)-5-methyl-2,3,4,5-tetrahydropyridin-2-yl]-4-fluorophenyl}-6-methoxypyrimidine-4-carboxamide, ...
Authors:Shaffer, P.L.
Deposit date:2021-06-04
Release date:2021-10-06
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:JNJ-67569762, A 2-Aminotetrahydropyridine-Based Selective BACE1 Inhibitor Targeting the S3 Pocket: From Discovery to Clinical Candidate.
J.Med.Chem., 64, 2021
7N66
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BU of 7n66 by Molmil
BACE-1 in complex with ligand 12
Descriptor: Beta-secretase 1, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Shaffer, P.L.
Deposit date:2021-06-07
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:JNJ-67569762, A 2-Aminotetrahydropyridine-Based Selective BACE1 Inhibitor Targeting the S3 Pocket: From Discovery to Clinical Candidate.
J.Med.Chem., 64, 2021
6SHT
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BU of 6sht by Molmil
Molecular structure of mouse apoferritin resolved at 2.7 Angstroms with the Glacios cryo-microscope
Descriptor: FE (III) ION, Ferritin heavy chain, MAGNESIUM ION
Authors:Hamdi, F, Tueting, C, Semchonok, D, Kyrilis, F, Meister, A, Skalidis, I, Schmidt, L, Parthier, C, Stubbs, M.T, Kastritis, P.L.
Deposit date:2019-08-08
Release date:2020-05-13
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:2.7 angstrom cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope.
Plos One, 15, 2020
3DFJ
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BU of 3dfj by Molmil
Crystal structure of human Prostasin
Descriptor: CHLORIDE ION, Prostasin
Authors:Su, H.P, Rickert, K.W, Darke, P.L, Munshi, S.K.
Deposit date:2008-06-12
Release date:2008-10-14
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of human prostasin, a target for the regulation of hypertension.
J.Biol.Chem., 283, 2008
3DF9
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BU of 3df9 by Molmil
Crystal structure of E. coli MTA/SAH nucleosidase in complex with BnT-DADMeImmA
Descriptor: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(benzylsulfanyl)methyl]pyrrolidin-3-ol, MTA/SAH nucleosidase
Authors:Siu, K.K.W, Howell, P.L.
Deposit date:2008-06-11
Release date:2009-03-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of Staphylococcus aureus 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Acta Crystallogr.,Sect.F, 64, 2008

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