6XI3

Crystal structure of tetra-tandem repeat in extending region of large adhesion protein

This is a non-PDB format compatible entry.

Summary for 6XI3

• Entry DOI: 10.2210/pdb6xi3/pdb
• Descriptor: Large adhesion protein (Lap) involved in biofilm formation, CALCIUM ION, CHLORIDE ION, ... (8 entities in total)
• Functional Keywords: adhesion protein, bacterial adhesin, calcium-binding protein, beta-sandwich domains, ig-like domain, metal binding protein
• Biological source: Marinobacter hydrocarbonoclasticus (strain ATCC 49840 / DSM 8798 / SP17)
• Total number of polymer chains: 1
• Total formula weight: 41326.45

Authors

Ye, Q.,Vance, T.D.R.,Davies, P.L. (deposition date: 2020-06-19, release date: 2020-10-14, Last modification date: 2024-05-22)

Primary citation

Vance, T.D.R.,Ye, Q.,Conroy, B.,Davies, P.L.
Essential role of calcium in extending RTX adhesins to their target.
J Struct Biol X, 4:100036-100036, 2020

PubMed Abstract: RTX adhesins are long, multi-domain proteins present on the outer membrane of many Gram-negative bacteria. From this vantage point, adhesins use their distal ligand-binding domains for surface attachment leading to biofilm formation. To expand the reach of the ligand-binding domains, RTX adhesins maintain a central extender region of multiple tandem repeats, which makes up most of the proteins' large molecular weight. Alignments of the 10-15-kDa extender domains show low sequence identity between adhesins. Here we have produced and structurally characterized protein constructs of four tandem repeats (tetra-tandemers) from two different RTX adhesins. In comparing the tetra-tandemers to each other and already solved structures from and , the extender domains fold as diverse beta-sandwich structures with widely differing calcium contents. However, all the tetra-tandemers have at least one calcium ion coordinated in the linker region between beta-sandwich domains whose role appears to be the rigidification of the extender region to help the adhesin extend its reach.

PubMed: 32984811
DOI: 10.1016/j.yjsbx.2020.100036

Experimental method

X-RAY DIFFRACTION (2 Å)