Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51964 件

6I8H
DownloadVisualize
BU of 6i8h by Molmil
Structure of the plant immune signaling node EDS1 (enhanced disease susceptibility 1) in complex with nanobody ENB15
分子名称: EDS1-specific nanobody, Protein EDS1L
著者Niefind, K, Voss, M, Toelzer, C.
登録日2018-11-20
公開日2019-10-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.682 Å)
主引用文献Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation.
J.Struct.Biol., 208, 2019
4HZ2
DownloadVisualize
BU of 4hz2 by Molmil
Crystal structure of glutathione s-transferase xaut_3756 (target efi-507152) from xanthobacter autotrophicus py2
分子名称: BENZOIC ACID, GLUTATHIONE, Glutathione S-transferase domain, ...
著者Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Al Obaidi, N.F, Stead, M, Love, J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2012-11-14
公開日2012-11-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of glutathione s-transferase xaut_3756 from xanthobacter autotrophicus py2
To be Published
1ICA
DownloadVisualize
BU of 1ica by Molmil
REFINED THREE-DIMENSIONAL STRUCTURE OF INSECT DEFENSIN A
分子名称: INSECT DEFENSIN A
著者Cornet, B, Bonmatin, J.M, Ptak, M, Vovelle, F.
登録日1994-12-16
公開日1995-07-10
最終更新日2024-10-09
実験手法SOLUTION NMR
主引用文献Refined three-dimensional solution structure of insect defensin A.
Structure, 3, 1995
3EH7
DownloadVisualize
BU of 3eh7 by Molmil
The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
分子名称: 4-hydroxybutyrate CoA-transferase, CHLORIDE ION
著者Cuff, M.E, Duggan, E, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2008-09-11
公開日2008-12-09
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
TO BE PUBLISHED
6IJB
DownloadVisualize
BU of 6ijb by Molmil
Structure of 3-methylmercaptopropionate CoA ligase mutant K523A in complex with AMP and MMPA
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-(methylsulfanyl)propanoic acid, ADENOSINE MONOPHOSPHATE, ...
著者Shao, X, Cao, H.Y, Wang, P, Li, C.Y, Zhao, F, Peng, M, Chen, X.L, Zhang, Y.Z.
登録日2018-10-09
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.111 Å)
主引用文献Mechanistic insight into 3-methylmercaptopropionate metabolism and kinetical regulation of demethylation pathway in marine dimethylsulfoniopropionate-catabolizing bacteria.
Mol.Microbiol., 111, 2019
3OVJ
DownloadVisualize
BU of 3ovj by Molmil
Structure of an amyloid forming peptide KLVFFA from amyloid beta in complex with orange G
分子名称: 7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid, KLVFFA hexapeptide segment from Amyloid beta
著者Landau, M, Eisenberg, D.
登録日2010-09-16
公開日2011-07-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Towards a pharmacophore for amyloid.
Plos Biol., 9, 2011
3OVM
DownloadVisualize
BU of 3ovm by Molmil
X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ZINC ION, ...
著者Pegan, S.D, Sturdy, M, Ferry, G, Delagrange, P, Boutin, J.A.
登録日2010-09-16
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献X-ray structural studies of quinone reductase 2 nanomolar range inhibitors.
Protein Sci., 20, 2011
3P6J
DownloadVisualize
BU of 3p6j by Molmil
Crystal structure of Symfoil-4T Permutation #3: de novo designed beta-trefoil architecture with symmetric primary structure
分子名称: de novo designed beta-trefoil architecture with symmetric primary structure
著者Blaber, M, Lee, J.
登録日2010-10-11
公開日2011-10-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Permutations study of de novo designed symmetric beta-trefoil architecture
To be Published
6IK5
DownloadVisualize
BU of 6ik5 by Molmil
Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with galactose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
著者Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
登録日2018-10-15
公開日2018-11-28
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
1I2V
DownloadVisualize
BU of 1i2v by Molmil
NMR SOLUTION STRUCTURES OF AN ANTIFUNGAL AND ANTIBACTERIAL MUTANT OF HELIOMICIN
分子名称: DEFENSIN HELIOMICIN
著者Lamberty, M, Caille, A, Landon, C, Tassin-Moindrot, S, Hetru, C, Bulet, P, Vovelle, F.
登録日2001-02-12
公開日2002-02-12
最終更新日2021-10-27
実験手法SOLUTION NMR
主引用文献Solution structures of the antifungal heliomicin and a selected variant with both antibacterial and antifungal activities.
Biochemistry, 40, 2001
6RS6
DownloadVisualize
BU of 6rs6 by Molmil
X-ray crystal structure of LsAA9B
分子名称: AA9, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Frandsen, K.E.H, Tovborg, M, Poulsen, J.C.N, Johansen, K.S, Lo Leggio, L.
登録日2019-05-21
公開日2019-09-11
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J.Biol.Chem., 294, 2019
3EIS
DownloadVisualize
BU of 3eis by Molmil
Crystal Structure of Arylmalonate Decarboxylase
分子名称: Arylmalonate decarboxylase, GLYCEROL, SULFATE ION
著者Nakasako, M, Obata, R, Miyamoto, K, Ohta, H.
登録日2008-09-17
公開日2009-09-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase
To be Published
4MUY
DownloadVisualize
BU of 4muy by Molmil
IspH in complex with pyridin-4-ylmethyl diphosphate
分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-4-ylmethyl trihydrogen diphosphate
著者Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M.
登録日2013-09-23
公開日2014-06-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH.
J.Am.Chem.Soc., 136, 2014
3TUL
DownloadVisualize
BU of 3tul by Molmil
Crystal structure of N-terminal region of Type III Secretion Major Translocator SipB (residues 82-226)
分子名称: Cell invasion protein sipB
著者Barta, M.L, Dickenson, N.E, Patel, M, Keightley, J.A, Picking, W.D, Picking, W.L, Geisbrecht, B.V.
登録日2011-09-16
公開日2012-02-15
最終更新日2012-03-28
実験手法X-RAY DIFFRACTION (2.793 Å)
主引用文献The Structures of Coiled-Coil Domains from Type III Secretion System Translocators Reveal Homology to Pore-Forming Toxins.
J.Mol.Biol., 417, 2012
1I2Y
DownloadVisualize
BU of 1i2y by Molmil
1.66 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMINE FORM
分子名称: DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3'), SPERMINE
著者Tereshko, V, Wallace, S, Usman, N, Wincott, F, Egli, M.
登録日2001-02-12
公開日2001-04-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid.
RNA, 7, 2001
3E7J
DownloadVisualize
BU of 3e7j by Molmil
HeparinaseII H202A/Y257A double mutant complexed with a heparan sulfate tetrasaccharide substrate
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Heparinase II protein, ...
著者Shaya, D, Cygler, M.
登録日2008-08-18
公開日2008-12-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate.
J.Biol.Chem., 285, 2010
1I4E
DownloadVisualize
BU of 1i4e by Molmil
CRYSTAL STRUCTURE OF THE CASPASE-8/P35 COMPLEX
分子名称: Caspase-8, Early 35 kDa protein
著者Xu, G, Cirilli, M, Huang, Y, Rich, R.L, Myszka, D.G, Wu, H.
登録日2001-02-20
公開日2001-03-28
最終更新日2013-09-25
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Covalent inhibition revealed by the crystal structure of the caspase-8/p35 complex.
Nature, 410, 2001
3P8P
DownloadVisualize
BU of 3p8p by Molmil
Crystal Structure of Human Dimethylarginine Dimethylaminohydrolase-1 (DDAH-1) variant C274S bound with N5-(1-iminopentyl)-L-ornithine
分子名称: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, N~5~-[(1E)-pentanimidoyl]-L-ornithine
著者Monzingo, A.F, Lluis, M, Wang, Y, Fast, W, Robertus, J.D.
登録日2010-10-14
公開日2010-11-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Characterization of C-Alkyl Amidines as Bioavailable Covalent Reversible Inhibitors of Human DDAH-1.
Chemmedchem, 6, 2011
3EA6
DownloadVisualize
BU of 3ea6 by Molmil
Atomic resolution of crystal structure of SEK
分子名称: IODIDE ION, Staphylococcal enterotoxin K, ZINC ION
著者Shi, K, Huseby, M, Schlievert, P.M, Ohlendorf, D.H, Earhart, C.A.
登録日2008-08-24
公開日2009-06-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (0.92 Å)
主引用文献Structural Studies of an Emerging Pyrogenic Superantigen, SEK
To be Published
4I1K
DownloadVisualize
BU of 4i1k by Molmil
Crystal Structure of VRN1 (Residues 208-341)
分子名称: B3 domain-containing transcription factor VRN1, CHLORIDE ION
著者King, G, Chanson, A.H, McCallum, E.J, Ohme-Takagi, M, Byriel, K, Hill, J.M, Martin, J.L, Mylne, J.S.
登録日2012-11-21
公開日2012-12-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Arabidopsis B3 Domain Protein VERNALIZATION1 (VRN1) Is Involved in Processes Essential for Development, with Structural and Mutational Studies Revealing Its DNA-binding Surface.
J.Biol.Chem., 288, 2013
3OY3
DownloadVisualize
BU of 3oy3 by Molmil
Crystal structure of ABL T315I mutant kinase domain bound with a DFG-out inhibitor AP24589
分子名称: 5-[(5-{[4-{[4-(2-hydroxyethyl)piperazin-1-yl]methyl}-3-(trifluoromethyl)phenyl]carbamoyl}-2-methylphenyl)ethynyl]-1-methyl-1H-imidazole-2-carboxamide, Tyrosine-protein kinase ABL1
著者Zhou, T, Commodore, L, Huang, W.S, Wang, Y, Thomas, M, Keats, J, Xu, Q, Rivera, V, Shakespeare, W.C, Clackson, T, Dalgarno, D.C, Zhu, X.
登録日2010-09-22
公開日2010-12-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural Mechanism of the Pan-BCR-ABL Inhibitor Ponatinib (AP24534): Lessons for Overcoming Kinase Inhibitor Resistance.
Chem.Biol.Drug Des., 77, 2011
6IC2
DownloadVisualize
BU of 6ic2 by Molmil
Polypharmacology of Epacadostat: a Potent and Selective Inhibitor of the Tumor Associated Carbonic Anhydrases IX and XII
分子名称: Carbonic anhydrase 2, N-(3-bromo-4-fluorophenyl)-N'-hydroxy-4-{[2-(sulfamoylamino)ethyl]amino}-1,2,5-oxadiazole-3-carboximidamide, ZINC ION
著者Angeli, A, Ferraroni, M, Supuran, C.T, Carta, F.
登録日2018-12-01
公開日2019-05-15
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Polypharmacology of epacadostat: a potent and selective inhibitor of the tumor associated carbonic anhydrases IX and XII.
Chem.Commun.(Camb.), 55, 2019
4I2A
DownloadVisualize
BU of 4i2a by Molmil
Binary complex of mouse TdT with ssDNA in absence of divalent transition metal ion
分子名称: 5'-D(*AP*AP*(BRU)P*AP*A)-3', DNA nucleotidylexotransferase, MAGNESIUM ION, ...
著者Gouge, J, Delarue, M.
登録日2012-11-21
公開日2013-07-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
4I2B
DownloadVisualize
BU of 4i2b by Molmil
Ternary complex of mouse TdT with ssDNA and AMPcPP
分子名称: 5'-D(P*AP*AP*AP*AP*A)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, ...
著者Gouge, J, Delarue, M.
登録日2012-11-21
公開日2013-07-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
2YN3
DownloadVisualize
BU of 2yn3 by Molmil
Structural insight into the giant calcium-binding adhesin SiiE: implications for the adhesion of Salmonella enterica to polarized epithelial cells
分子名称: CALCIUM ION, IODIDE ION, PHOSPHATE ION, ...
著者Griessl, M.H, Schmid, B, Kassler, K, Braunsmann, C, Ritter, R, Barlag, B, Sturm, K.U, Danzer, C, Wagner, C, Schaeffer, T.E, Sticht, H, Hensel, M, Muller, Y.A.
登録日2012-10-11
公開日2013-04-03
最終更新日2013-06-05
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural Insight Into the Giant Ca(2+)-Binding Adhesin Siie: Implications for the Adhesion of Salmonella Enterica to Polarized Epithelial Cells.
Structure, 21, 2013

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon