Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1035 results

4GMI
DownloadVisualize
BU of 4gmi by Molmil
BACE-1 in complex with HEA-type macrocyclic inhibitor, MV078571
Descriptor: (4S,8E)-4-[(1R)-2-{[2-(5-tert-butyl-1,3-oxazol-2-yl)propan-2-yl]amino}-1-hydroxyethyl]-16-methyl-6-oxa-3-azabicyclo[12.3.1]octadeca-1(18),8,14,16-tetraene-2,13-dione, ACETATE ION, Beta-secretase 1, ...
Authors:Lindberg, J.D, Derbyshire, D.
Deposit date:2012-08-16
Release date:2013-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design and synthesis of novel BACE-1 inhibitors
To be Published
3F1R
DownloadVisualize
BU of 3f1r by Molmil
Crystal structure of FGF20 dimer
Descriptor: Fibroblast growth factor 20, SULFATE ION
Authors:Kalinina, J, Mohammadi, M.
Deposit date:2008-10-28
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Homodimerization controls the fibroblast growth factor 9 subfamily's receptor binding and heparan sulfate-dependent diffusion in the extracellular matrix
Mol.Cell.Biol., 29, 2009
4H1G
DownloadVisualize
BU of 4h1g by Molmil
Structure of Candida albicans Kar3 motor domain fused to maltose-binding protein
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Allingham, J.A, Duan, D, Delorme, C, Joshi, M.
Deposit date:2012-09-10
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the Candida albicans Kar3 kinesin motor domain fused to maltose-binding protein.
Biochem.Biophys.Res.Commun., 428, 2012
3DM6
DownloadVisualize
BU of 3dm6 by Molmil
Beta-secretase 1 complexed with statine-based inhibitor
Descriptor: 5-[[(2S)-2-[[(3R,4S)-5-(3,5-difluorophenoxy)-3-hydroxy-4-[[3-(methyl-methylsulfonyl-amino)-5-[[(1R)-1-phenylethyl]carbamoyl]phenyl]carbonylamino]pentanoyl]amino]-3-methyl-butanoyl]amino]benzene-1,3-dicarboxylic acid, Beta-secretase 1, ISOPROPYL ALCOHOL
Authors:Lindberg, J, Borkakoti, N, Nystrom, S.
Deposit date:2008-06-30
Release date:2008-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Design, synthesis and SAR of potent statine-based BACE-1 inhibitors: exploration of P1 phenoxy and benzyloxy residues
Bioorg.Med.Chem., 16, 2008
3Q8J
DownloadVisualize
BU of 3q8j by Molmil
Crystal Structure of Asteropsin A from Marine Sponge Asteropus sp.
Descriptor: Asteropsin A, METHANOL
Authors:Bowling, J.J, Fronczek, F.R, Hamann, M.T, Li, H, Jung, J.H.
Deposit date:2011-01-06
Release date:2012-04-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:An Uncommon Crystal Structure of a Marine Knottin Peptide from Asteropus sp.
To be published
4DPI
DownloadVisualize
BU of 4dpi by Molmil
BACE-1 in complex with HEA-macrocyclic inhibitor, MV078512
Descriptor: (4S,8E,11R)-4-[(1R)-1-hydroxy-2-{[3-(propan-2-yl)benzyl]amino}ethyl]-16-methyl-11-phenyl-6-oxa-3,12-diazabicyclo[12.3.1]octadeca-1(18),8,14,16-tetraene-2,13-dione, Beta-secretase 1
Authors:Lindberg, J, Borkakoti, N, Derbyshire, D.
Deposit date:2012-02-13
Release date:2012-07-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Highly potent macrocyclic BACE-1 inhibitors incorporating a hydroxyethylamine core: design, synthesis and X-ray crystal structures of enzyme inhibitor complexes.
Bioorg.Med.Chem., 20, 2012
4DPF
DownloadVisualize
BU of 4dpf by Molmil
BACE-1 in complex with a HEA-macrocyclic type inhibitor
Descriptor: Beta-secretase 1, N-[(4S,8E,11S)-4-[(1R)-1-hydroxy-2-{[3-(propan-2-yl)benzyl]amino}ethyl]-2,13-dioxo-11-phenyl-6-oxa-3,12-diazabicyclo[12.3.1]octadeca-1(18),8,14,16-tetraen-16-yl]-N-methylmethanesulfonamide
Authors:Lindberg, J, Borkakoti, N, Derbyshire, D.
Deposit date:2012-02-13
Release date:2012-07-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Highly potent macrocyclic BACE-1 inhibitors incorporating a hydroxyethylamine core: design, synthesis and X-ray crystal structures of enzyme inhibitor complexes.
Bioorg.Med.Chem., 20, 2012
2R2M
DownloadVisualize
BU of 2r2m by Molmil
2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors
Descriptor: Hirudin-3A, N-[2-({[amino(imino)methyl]amino}oxy)ethyl]-2-{6-chloro-3-[(2,2-difluoro-2-phenylethyl)amino]-2-fluorophenyl}acetamide, Thrombin heavy chain, ...
Authors:Spurlino, J.
Deposit date:2007-08-27
Release date:2008-08-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors
Bioorg.Med.Chem.Lett., 17, 2007
1DEM
DownloadVisualize
BU of 1dem by Molmil
PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS
Descriptor: DENDROTOXIN I
Authors:Lancelin, J.-M, Foray, M.-F.
Deposit date:1994-03-07
Release date:1994-05-31
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Proteinase inhibitor homologues as potassium channel blockers.
Nat.Struct.Biol., 1, 1994
2RDL
DownloadVisualize
BU of 2rdl by Molmil
Hamster Chymase 2
Descriptor: Chymase 2, METHOXYSUCCINYL-ALA-ALA-PRO-ALA-CHLOROMETHYLKETONE INHIBITOR, SULFATE ION
Authors:Spurlino, J, Abad, M, Kervinen, J.
Deposit date:2007-09-24
Release date:2007-10-30
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for elastolytic substrate specificity in rodent alpha-chymases.
J.Biol.Chem., 283, 2008
2MXO
DownloadVisualize
BU of 2mxo by Molmil
NMR structure of spider toxin- G7W/N24S mutant of TRTX-Hhn2b
Descriptor: Mu-theraphotoxin-Hhn2b
Authors:Klint, J.K, Chin, Y.K.Y, Mobli, M.
Deposit date:2015-01-08
Release date:2015-12-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Rational Engineering Defines a Molecular Switch That Is Essential for Activity of Spider-Venom Peptides against the Analgesics Target NaV1.7
Mol.Pharmacol., 88, 2015
2MZW
DownloadVisualize
BU of 2mzw by Molmil
Staphylococcus aureus FusB:EF-GC3 complex
Descriptor: Elongation factor G, Far1, ZINC ION
Authors:Tomlinson, J.H, Thompson, G.S, Kalverda, A.P, Zhuravleva, A, O'Neill, A.
Deposit date:2015-02-25
Release date:2016-01-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A target-protection mechanism of antibiotic resistance at atomic resolution: insights into FusB-type fusidic acid resistance.
Sci Rep, 6, 2016
2O0A
DownloadVisualize
BU of 2o0a by Molmil
The structure of the C-terminal domain of Vik1 has a motor domain fold but lacks a nucleotide-binding site.
Descriptor: 1,2-ETHANEDIOL, S.cerevisiae chromosome XVI reading frame ORF YPL253c
Authors:Allingham, J.S, Sproul, L.R, Rayment, I, Gilbert, S.P.
Deposit date:2006-11-27
Release date:2007-03-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Vik1 modulates microtubule-Kar3 interactions through a motor domain that lacks an active site.
Cell(Cambridge,Mass.), 128, 2007
1FCT
DownloadVisualize
BU of 1fct by Molmil
NMR STRUCTURES OF FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE FROM CHLAMYDOMONAS REINHARDTII PROMOTED BY TRIFLUOROETHANOL IN AQUEOUS SOLUTION
Descriptor: FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQUENCE FROM THE GREEN ALGA
Authors:Lancelin, J.-M, Blackledge, M.
Deposit date:1994-03-30
Release date:1994-06-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structures of ferredoxin chloroplastic transit peptide from Chlamydomonas reinhardtii promoted by trifluoroethanol in aqueous solution.
FEBS Lett., 343, 1994
1G35
DownloadVisualize
BU of 1g35 by Molmil
CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR, AHA024
Descriptor: 2-[4-(HYDROXY-METHOXY-METHYL)-BENZYL]-7-(4-HYDROXYMETHYL-BENZYL)-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-1LAMBDA6-[1,2,7]THIADIAZEPANE-4,5-DIOL, HIV-1 PROTEASE
Authors:Lindberg, J, Unge, T.
Deposit date:2000-10-23
Release date:2001-06-06
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis and comparative molecular field analysis (CoMFA) of symmetric and nonsymmetric cyclic sulfamide HIV-1 protease inhibitors.
J.Med.Chem., 44, 2001
1G2K
DownloadVisualize
BU of 1g2k by Molmil
HIV-1 PROTEASE WITH CYCLIC SULFAMIDE INHIBITOR, AHA047
Descriptor: 3-(7-BENZYL-4,5-DIHYDROXY-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-1L6-[1,2,7]THIADIAZEPAN-2-YLMETHYL)-N-METHYL-BENZAMIDE, PROTEASE RETROPEPSIN
Authors:Lindberg, J, Unge, T.
Deposit date:2000-10-20
Release date:2001-06-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Synthesis and comparative molecular field analysis (CoMFA) of symmetric and nonsymmetric cyclic sulfamide HIV-1 protease inhibitors.
J.Med.Chem., 44, 2001
1ANF
DownloadVisualize
BU of 1anf by Molmil
MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTOSE
Descriptor: MALTODEXTRIN-BINDING PROTEIN, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Spurlino, J.C, Quiocho, F.A.
Deposit date:1997-06-25
Release date:1997-12-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Extensive features of tight oligosaccharide binding revealed in high-resolution structures of the maltodextrin transport/chemosensory receptor.
Structure, 5, 1997
1Q9J
DownloadVisualize
BU of 1q9j by Molmil
Structure of polyketide synthase associated protein 5 from Mycobacterium tuberculosis
Descriptor: Polyketide synthase associated protein 5
Authors:Buglino, J, Onwueme, K.C, Quadri, L.E, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2003-08-25
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
J.Biol.Chem., 279, 2004
1Q8N
DownloadVisualize
BU of 1q8n by Molmil
Solution Structure of the Malachite Green RNA Binding Aptamer
Descriptor: MALACHITE GREEN, RNA Aptamer
Authors:Flinders, J, DeFina, S.C, Brackett, D.M, Baugh, C, Wilson, C, Dieckmann, T.
Deposit date:2003-08-21
Release date:2004-03-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex.
Chembiochem, 5, 2004
1HFC
DownloadVisualize
BU of 1hfc by Molmil
1.56 ANGSTROM STRUCTURE OF MATURE TRUNCATED HUMAN FIBROBLAST COLLAGENASE
Descriptor: CALCIUM ION, FIBROBLAST COLLAGENASE, METHYLAMINO-PHENYLALANYL-LEUCYL-HYDROXAMIC ACID, ...
Authors:Spurlino, J.C, Smith, D.L.
Deposit date:1994-09-13
Release date:1995-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:1.56 A structure of mature truncated human fibroblast collagenase.
Proteins, 19, 1994
1DBY
DownloadVisualize
BU of 1dby by Molmil
NMR STRUCTURES OF CHLOROPLAST THIOREDOXIN M CH2 FROM THE GREEN ALGA CHLAMYDOMONAS REINHARDTII
Descriptor: CHLOROPLAST THIOREDOXIN M CH2
Authors:Lancelin, J.-M, Guilhaudis, L, Krimm, I, Blackledge, M.J, Marion, D.
Deposit date:1999-11-03
Release date:1999-11-08
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:NMR structures of thioredoxin m from the green alga Chlamydomonas reinhardtii.
Proteins, 41, 2000
1DEN
DownloadVisualize
BU of 1den by Molmil
PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS
Descriptor: DENDROTOXIN I
Authors:Lancelin, J.-M, Foray, M.-F.
Deposit date:1994-03-07
Release date:1994-05-31
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Proteinase inhibitor homologues as potassium channel blockers.
Nat.Struct.Biol., 1, 1994
2MT7
DownloadVisualize
BU of 2mt7 by Molmil
Solution structure of spider-venom peptide Hs1a
Descriptor: Hs1a
Authors:Klint, J.K, King, G.F, Mobli, M.
Deposit date:2014-08-14
Release date:2015-08-19
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Nav1.7 inhibitors normalise mechanical responses in chronic visceral hypersensitivity
To be Published
2MQF
DownloadVisualize
BU of 2mqf by Molmil
NMR structure of spider toxin-TRTX-Hhn2b
Descriptor: Mu-theraphotoxin-Hhn2b
Authors:Klint, J.K, Chin, Y.K.Y, Mobli, M.
Deposit date:2014-06-19
Release date:2015-07-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Rational Engineering Defines a Molecular Switch That Is Essential for Activity of Spider-Venom Peptides against the Analgesics Target NaV1.7
Mol.Pharmacol., 88, 2015
2MPQ
DownloadVisualize
BU of 2mpq by Molmil
Solution structure of the sodium channel toxin Hd1a
Descriptor: Hd1a
Authors:Klint, J.K, Mobli, M, King, G.F.
Deposit date:2014-06-01
Release date:2015-03-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Seven novel modulators of the analgesic target NaV 1.7 uncovered using a high-throughput venom-based discovery approach.
Br.J.Pharmacol., 172, 2015

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon