Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 5628 results

3OLM
DownloadVisualize
BU of 3olm by Molmil
Structure and Function of a Ubiquitin Binding Site within the Catalytic Domain of a HECT Ubiquitin Ligase
Descriptor: E3 ubiquitin-protein ligase RSP5, Ubiquitin
Authors:Kim, H.C, Steffen, A, Chen, J, Huibregtse, J.M.
Deposit date:2010-08-26
Release date:2011-03-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:Structure and function of a HECT domain ubiquitin-binding site.
Embo Rep., 12, 2011
1QKR
DownloadVisualize
BU of 1qkr by Molmil
Crystal structure of the vinculin tail and a pathway for activation
Descriptor: SULFATE ION, VINCULIN
Authors:Bakolitsa, C, De Pereda, J.M, Bagshaw, C.R, Critchley, D.R, Liddington, R.C.
Deposit date:1999-08-04
Release date:2000-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Vinculin Tail and a Pathway for Activation
Cell(Cambridge,Mass.), 99, 1999
2FJN
DownloadVisualize
BU of 2fjn by Molmil
The structure of phosphotyrosine phosphatase 1B in complex with compound 2
Descriptor: (4-{(2S,4E)-2-(1H-1,2,3-BENZOTRIAZOL-1-YL)-2-[4-(METHOXYCARBONYL)PHENYL]-5-PHENYLPENT-4-ENYL}PHENYL)(DIFLUORO)METHYLPHOSPHONIC ACID, CHLORIDE ION, Tyrosine-protein phosphatase, ...
Authors:Asante-Appiah, E, Patel, S, Desponts, C, Taylor, J.M, Lau, C, Dufresne, C, Therien, M, Friesen, R, Becker, J.W, Leblanc, Y, Kennedy, B.P, Scapin, G.
Deposit date:2006-01-03
Release date:2006-01-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conformation-assisted inhibition of protein-tyrosine phosphatase-1B elicits inhibitor selectivity over T-cell protein-tyrosine phosphatase.
J.Biol.Chem., 281, 2006
1QZR
DownloadVisualize
BU of 1qzr by Molmil
CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II BOUND TO ICRF-187 (DEXRAZOXANE)
Descriptor: (S)-4,4'-(1-METHYL-1,2-ETHANEDIYL)BIS-2,6-PIPERAZINEDIONE, DNA topoisomerase II, MAGNESIUM ION, ...
Authors:Classen, S, Olland, S, Berger, J.M.
Deposit date:2003-09-17
Release date:2003-09-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003
3E96
DownloadVisualize
BU of 3e96 by Molmil
Crystal structure of dihydrodipicolinate synthase from bacillus clausii
Descriptor: Dihydrodipicolinate synthase
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-08-21
Release date:2008-09-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of dihydrodipicolinate synthase from bacillus clausii
To be Published
4AU3
DownloadVisualize
BU of 4au3 by Molmil
Crystal Structure of a Hsp47-collagen complex
Descriptor: 18ER COLLAGEN MODEL PEPTIDE 15-R8, SERPIN PEPTIDASE INHIBITOR, CLADE H (HEAT SHOCK PROTEIN 47 ), ...
Authors:Widmer, C, Gebauer, J.M, Brunstein, E, Rodenbaum, S, Zaucke, F, Drogemuller, C, Leeb, T, Baumann, U.
Deposit date:2012-05-14
Release date:2012-08-15
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Molecular Basis for the Action of the Collagen-Specific Chaperone Hsp47/Serpinh1 and its Structure-Specific Client Recognition.
Proc.Natl.Acad.Sci.USA, 109, 2012
3I13
DownloadVisualize
BU of 3i13 by Molmil
Bacillus cereus Zn-dependent metallo-beta-lactamase at pH 5.8
Descriptor: Beta-lactamase 2, ZINC ION
Authors:Gonzalez, J.M, Buschiazzo, A, Vila, A.J.
Deposit date:2009-06-25
Release date:2009-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Evidence of adaptability in metal coordination geometry and active-site loop conformation among B1 metallo-beta-lactamases .
Biochemistry, 49, 2010
3EM1
DownloadVisualize
BU of 3em1 by Molmil
Crystal structure of the mimivirus NDK +Kpn-N62L double mutant complexed with dTDP
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
Authors:Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
Deposit date:2008-09-23
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3I45
DownloadVisualize
BU of 3i45 by Molmil
CRYSTAL STRUCTURE OF putative twin-arginine translocation pathway signal protein from Rhodospirillum rubrum Atcc 11170
Descriptor: NICOTINIC ACID, Twin-arginine translocation pathway signal protein
Authors:Malashkevich, V.N, Toro, R, Morano, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-07-01
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:CRYSTAL STRUCTURE OF putative twin-arginine translocation pathway signal protein from Rhodospirillum rubrum Atcc 11170
To be Published
1N6Q
DownloadVisualize
BU of 1n6q by Molmil
HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N)
Descriptor: 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3', 5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', MAGNESIUM ION, ...
Authors:Sarafianos, S.G, Clark Jr, A.D, Das, K, Tuske, S, Birktoft, J.J, Ilankumaran, I, Ramesha, A.R, Sayer, J.M, Jerina, D.M, Boyer, P.L, Hughes, S.H, Arnold, E.
Deposit date:2002-11-11
Release date:2003-01-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of HIV-1 Reverse Transcriptase with Pre- and Post-translocation AZTMP-terminated DNA
Embo J., 21, 2002
3I6E
DownloadVisualize
BU of 3i6e by Molmil
CRYSTAL STRUCTURE OF MUCONATE LACTONIZING ENZYME FROM Ruegeria pomeroyi.
Descriptor: MAGNESIUM ION, Muconate cycloisomerase I, SODIUM ION
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-07-07
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of muconate lactonizing enzyme from Ruegeria pomeroyi.
To be Published
4B3L
DownloadVisualize
BU of 4b3l by Molmil
Family 1 6-phospho-beta-D glycosidase from Streptococcus pyogenes
Descriptor: BETA-GLUCOSIDASE
Authors:Stepper, J, Dabin, J, Ekloef, J.M, Thongpoo, P, Kongsaeree, P.T, Taylor, E.J, Turkenburg, J.P, Brumer, H, Davies, G.J.
Deposit date:2012-07-24
Release date:2013-01-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure and Activity of the Streptococcus Pyogenes Family Gh1 6-Phospho Beta-Glycosidase Spy1599
Acta Crystallogr.,Sect.D, 69, 2013
1Q9P
DownloadVisualize
BU of 1q9p by Molmil
Solution structure of the mature HIV-1 protease monomer
Descriptor: HIV-1 Protease
Authors:Ishima, R, Torchia, D.A, Lynch, S.M, Gronenborn, A.M, Louis, J.M.
Deposit date:2003-08-25
Release date:2004-03-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the mature HIV-1 protease monomer: Insight into the tertiary fold and stability of a precursor
J.Biol.Chem., 278, 2003
3EEQ
DownloadVisualize
BU of 3eeq by Molmil
Crystal structure of a putative cobalamin biosynthesis protein G homolog from Sulfolobus solfataricus
Descriptor: SULFATE ION, putative Cobalamin biosynthesis protein G homolog
Authors:Bonanno, J.B, Gilmore, M, Bain, K.T, Chang, S, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-09-05
Release date:2008-09-30
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a putative cobalamin biosynthesis protein G homolog from Sulfolobus solfataricus
To be Published
4B6O
DownloadVisualize
BU of 4b6o by Molmil
Structure of Mycobacterium tuberculosis Type II Dehydroquinase inhibited by (2S)-2-(4-methoxy)benzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
3MAE
DownloadVisualize
BU of 3mae by Molmil
CRYSTAL STRUCTURE OF PROBABLE DIHYDROLIPOAMIDE ACETYLTRANSFERASE FROM LISTERIA MONOCYTOGENES 4b F2365
Descriptor: 2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acetyltransferase, CHLORIDE ION, ...
Authors:Patskovsky, Y, Toro, R, Gilmore, M, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-03-23
Release date:2010-04-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:CRYSTAL STRUCTURE OF A CATALYTIC DOMAIN OF DIHYDROLIPOAMIDE ACETYLTRANSFERASE FROM LISTERIA MONOCYTOGENES 4b F2365
To be Published
4B0Y
DownloadVisualize
BU of 4b0y by Molmil
Determination of X-ray Structure of human SOUL by Molecular Replacement
Descriptor: HEME-BINDING PROTEIN 2
Authors:Freire, F, Carvalho, A.L, Aveiro, S.S, Charbonnier, P, Moulis, J.M, Romao, M.J, Goodfellow, B.J, Macedo, A.L.
Deposit date:2012-07-06
Release date:2012-08-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Human Soul: A Heme-Binding or a Bh3 Domain-Containing Protein
To be Published
3OPF
DownloadVisualize
BU of 3opf by Molmil
Crystal structure of TTHA0988 in space group P212121
Descriptor: GLYCEROL, Putative uncharacterized protein TTHA0988, SULFATE ION
Authors:Jacques, D.A, Kuramitsu, S, Yokoyama, S, Trewhella, J, Guss, J.M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-09-01
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The structure of TTHA0988 from Thermus thermophilus, a KipI-KipA homologue incorrectly annotated as an allophanate hydrolase
Acta Crystallogr.,Sect.D, 67, 2011
3ME8
DownloadVisualize
BU of 3me8 by Molmil
Crystal structure of putative electron transfer protein aq_2194 from Aquifex aeolicus VF5
Descriptor: Putative uncharacterized protein
Authors:Malashkevich, V.N, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of putative electron transfer protein aq_2194 from Aquifex aeolicus VF5
To be Published
1QXK
DownloadVisualize
BU of 1qxk by Molmil
Monoacid-Based, Cell Permeable, Selective Inhibitors of Protein Tyrosine Phosphatase 1B
Descriptor: 2-{4-[2-ACETYLAMINO-3-(4-CARBOXYMETHOXY-3-HYDROXY-PHENYL)-PROPIONYLAMINO]-BUTOXY}-6-HYDROXY-BENZOIC ACID METHYL ESTER, Protein-tyrosine phosphatase, non-receptor type 1
Authors:Xin, Z, Liu, G, Abad-Zapatero, C, Pei, Z, Szczepankiewick, B.G, Li, X, Zhang, T, Hutchins, C.W, Hajduk, P.J, Ballaron, S.J, Stashko, M.A, Lubben, T.H, Trevillyan, J.M, Jirousek, M.R.
Deposit date:2003-09-08
Release date:2003-10-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification of a Monoacid-Based, Cell Permeable, Selective Inhibitor of Protein Tyrosine Phosphatase 1B
BIOORG.MED.CHEM.LETT., 13, 2003
1R03
DownloadVisualize
BU of 1r03 by Molmil
crystal structure of a human mitochondrial ferritin
Descriptor: MAGNESIUM ION, mitochondrial ferritin
Authors:Corsi, B, Santambrogio, P, Arosio, P, Levi, S, Langlois d'Estaintot, B, Granier, T, Gallois, B, Chevallier, J.M, Precigoux, G.
Deposit date:2003-09-19
Release date:2004-06-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure and Biochemical Properties of the Human Mitochondrial Ferritin and its Mutant Ser144Ala
J.Mol.Biol., 340, 2004
3EKG
DownloadVisualize
BU of 3ekg by Molmil
CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM AZOTOBACTER VINELANDII complexed with Mg and L-TARTRATE
Descriptor: L(+)-TARTARIC ACID, MAGNESIUM ION, Mandelate racemase/muconate lactonizing enzyme
Authors:Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-09-19
Release date:2008-09-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM AZOTOBACTER VINELANDII complexed with Mg and L-TARTRATE
To be Published
1R0G
DownloadVisualize
BU of 1r0g by Molmil
mercury-substituted rubredoxin
Descriptor: MERCURY (II) ION, Rubredoxin
Authors:Maher, M, Cross, M, Wilce, M.C.J, Guss, J.M, Wedd, A.G.
Deposit date:2003-09-22
Release date:2004-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.
Acta Crystallogr.,Sect.D, 60, 2004
3R54
DownloadVisualize
BU of 3r54 by Molmil
Human Cyclophilin D Complexed with a Fragment
Descriptor: Peptidyl-prolyl cis-trans isomerase F, mitochondrial, pyrrolidine-1-carbaldehyde
Authors:Colliandre, L, Ahmed-Belkacem, H, Bessin, Y, Pawlotsky, J.M, Guichou, J.F.
Deposit date:2011-03-18
Release date:2012-03-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities.
Nat Commun, 7, 2016
1R0I
DownloadVisualize
BU of 1r0i by Molmil
cadmium-substituted rubredoxin
Descriptor: CADMIUM ION, Rubredoxin
Authors:Maher, M, Cross, M, Wilce, M.C.J, Guss, J.M, Wedd, A.G.
Deposit date:2003-09-22
Release date:2004-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.
Acta Crystallogr.,Sect.D, 60, 2004

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon