3EM1

Crystal structure of the mimivirus NDK +Kpn-N62L double mutant complexed with dTDP

Summary for 3EM1

Related2B8P
DescriptorNucleoside diphosphate kinase, MAGNESIUM ION, THYMIDINE-5'-DIPHOSPHATE, ... (4 entities in total)
Functional Keywordsphosphotransferase nucleotide binding, atp-binding, kinase, magnesium, metal-binding, nucleotide metabolism, nucleotide-binding, phosphoprotein, transferase
Biological sourceAcanthamoeba polyphaga mimivirus
Total number of polymer chains2
Total molecular weight34108.68
Authors
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C. (deposition date: 2008-09-23, release date: 2009-08-11, Last modification date: 2011-07-13)
Primary citation
Jeudy, S.,Lartigue, A.,Claverie, J.M.,Abergel, C.
Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83:7142-7150, 2009
PubMed: 19439473 (PDB entries with the same primary citation)
DOI: 10.1128/JVI.00511-09
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.5 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.189302.5%3.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3em1
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Molmil generated image of 3em1
rotated about x axis by 90°
Molmil generated image of 3em1
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 3em1
no rotation
Molmil generated image of 3em1
rotated about x axis by 90°
Molmil generated image of 3em1
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3em1.pdb1.gz [145.39 KB])