Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3EM1

Crystal structure of the mimivirus NDK +Kpn-N62L double mutant complexed with dTDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 142
ChainResidue
ATYD143
AHOH177
AHOH180

site_idAC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE TYD A 143
ChainResidue
ATHR92
AARG103
AILE110
AARG111
AASN113
AMG142
AHOH154
AHOH173
AHOH176
AHOH188
AHOH206
AHOH209
AHOH251
ALYS9
ATYR50
AHIS53
ATYR58
ALEU62
AARG86

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 142
ChainResidue
BTYD143
BHOH258
BHOH343
BHOH353

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE TYD B 143
ChainResidue
BLYS9
BHIS53
BTYR58
BLEU62
BARG86
BTHR92
BARG103
BILE110
BARG111
BASN113
BMG142
BHOH235
BHOH240
BHOH298
BHOH304
BHOH309
BHOH311
BHOH336

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Pros-phosphohistidine intermediate","evidences":[{"source":"PROSITE-ProRule","id":"PRU10030","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
AASN113
ALYS9

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BASN113
BLYS9

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ATYR50
ALYS9

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BTYR50
BLYS9

246333

PDB entries from 2025-12-17

PDB statisticsPDBj update infoContact PDBjnumon