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PDB: 81 results

7K44
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SGBP-B from a complex xyloglucan utilization locus in Bacteroides uniformis
Descriptor: CALCIUM ION, SGBP-B
Authors:Brumer, H, Van Petegem, F, Grondin, J.M.
Deposit date:2020-09-14
Release date:2021-09-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis.
Appl.Environ.Microbiol., 88, 2022
1UMZ
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BU of 1umz by Molmil
Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide XLLG.
Descriptor: XYLOGLUCAN ENDOTRANSGLYCOSYLASE, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Johansson, P, Brumer, H, Kallas, A.M, Henriksson, H, Denman, S.E, Teeri, T.T, Jones, T.A.
Deposit date:2003-09-03
Release date:2004-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding
Plant Cell, 16, 2004
1UN1
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Xyloglucan endotransglycosylase native structure.
Descriptor: GOLD ION, XYLOGLUCAN ENDOTRANSGLYCOSYLASE, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Johansson, P, Brumer, H, Kallas, A, Henriksson, H, Denman, S, Teeri, T.T, Jones, T.A.
Deposit date:2003-09-03
Release date:2004-03-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding
Plant Cell, 16, 2004
6VHO
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BU of 6vho by Molmil
Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G4G3G-NHCOCH2Br
Descriptor: Glycosyl hydrolase family 16, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-N-acetyl-beta-D-glucopyranosylamine
Authors:Tamura, K, Brumer, H, van Petegem, F.
Deposit date:2020-01-10
Release date:2021-01-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.148 Å)
Cite:Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases.
Acs Chem.Biol., 16, 2021
2CN3
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Crystal Structures of Clostridium thermocellum Xyloglucanase
Descriptor: BETA-1,4-XYLOGLUCAN HYDROLASE, CALCIUM ION, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-2)-alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Martinez-Fleites, C, Taylor, E.J, Guerreiro, C.I.P.D, Prates, J.A.M, Ferreira, L.M.A, Fontes, C.M.G.A, Baumann, M.J, Brumer, H, Davies, G.J.
Deposit date:2006-05-17
Release date:2006-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of Clostridium Thermocellum Xyloglucanase, Xgh74A, Reveal the Structural Basis for Xyloglucan Recognition and Degradation
J.Biol.Chem., 281, 2006
2CN2
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Crystal Structures of Clostridium thermocellum Xyloglucanase
Descriptor: BETA-1,4-XYLOGLUCAN HYDROLASE, CADMIUM ION
Authors:Martinez-Fleites, C, Taylor, E.J, Guerreiro, C.I, Prates, J.A.M, Ferreira, L.M.A, Fontes, C.M.G.A, Baumann, M.J, Brumer, H, Davies, G.J.
Deposit date:2006-05-17
Release date:2006-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Clostridium Thermocellum Xyloglucanase, Xgh74A, Reveal the Structural Basis for Xyloglucan Recognition and Degradation.
J.Biol.Chem., 281, 2006
3ZMR
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Bacteroides ovatus GH5 xyloglucanase in complex with a XXXG heptasaccharide
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CELLULASE (GLYCOSYL HYDROLASE FAMILY 5), ...
Authors:Larsbrink, J, Rogers, T.E, Hemsworth, G.R, McKee, L.S, Spadiut, O, Klinter, S, Pudlo, N.A, Urs, K, Kelly, A.G, Cederholm, S.N, Davies, G.J, Martens, E.C, Brumer, H.
Deposit date:2013-02-12
Release date:2014-01-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:A Discrete Genetic Locus Confers Xyloglucan Metabolism in Select Human Gut Bacteroidetes
Nature, 506, 2014
3QEE
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The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases
Descriptor: ACETATE ION, Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N, ...
Authors:Cartmell, A, Mckee, L.S, Pena, M, Larsbrink, J, Brumer, H, Lewis, R.J, Viks-Nielsen, A, Gilbert, H.J, Marles-Wright, J.
Deposit date:2011-01-20
Release date:2011-02-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:The Structure and Function of an Arabinan-specific {alpha}-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases.
J.Biol.Chem., 286, 2011
3QED
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BU of 3qed by Molmil
The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases
Descriptor: Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N, CALCIUM ION, ...
Authors:Cartmell, A, Mckee, L.S, Pena, M, Larsbrink, J, Brumer, H, Lewis, R.J, Viks-Nielsen, A, Gilbert, H.J, Marles-Wright, J.
Deposit date:2011-01-20
Release date:2011-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:The Structure and Function of an Arabinan-specific {alpha}-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases.
J.Biol.Chem., 286, 2011
3QEF
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BU of 3qef by Molmil
The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases
Descriptor: 1,2-ETHANEDIOL, Beta-xylosidase/alpha-L-arabinfuranosidase, gly43N, ...
Authors:Cartmell, A, Mckee, L.S, Pena, M, Larsbrink, J, Brumer, H, Lewis, R.J, Viks-Nielsen, A, Gilbert, H.J, Marles-Wright, J.
Deposit date:2011-01-20
Release date:2011-02-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.789 Å)
Cite:The Structure and Function of an Arabinan-specific {alpha}-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases.
J.Biol.Chem., 286, 2011
5JOV
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Bacteroides ovatus Xyloglucan PUL GH31 with bound 5FIdoF
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-fluoro-alpha-L-idopyranose, ...
Authors:Thompson, A.J, Hemsworth, G.R, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016
6P2K
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BU of 6p2k by Molmil
Crystal structure of AFV00434, an ancestral GH74 enzyme
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Stogios, P.J, Skarina, T, Arnal, G, Brumer, H, Savchenko, A.
Deposit date:2019-05-21
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.
J.Biol.Chem., 294, 2019
6P2O
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BU of 6p2o by Molmil
Crystal structure of Streptomyces rapamycinicus GH74 in complex with xyloglucan fragments XLLG and XXXG
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Stogios, P.J, Skarina, T, Arnal, G, Brumer, H, Savchenko, A.
Deposit date:2019-05-21
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.
J.Biol.Chem., 294, 2019
6P2L
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BU of 6p2l by Molmil
Crystal structure of Niastella koreensis GH74 (NkGH74) enzyme
Descriptor: CHLORIDE ION, Glycosyl hydrolase BNR repeat-containing protein, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Stogios, P.J, Skarina, T, Arnal, G, Brumer, H, Savchenko, A.
Deposit date:2019-05-21
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.
J.Biol.Chem., 294, 2019
6PAL
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BU of 6pal by Molmil
Bacteroides uniformis endo-laminarinase BuGH158 from the beta(1,3)-glucan utilization locus
Descriptor: ACETATE ION, SULFATE ION, Uncharacterized protein
Authors:Tamura, K, Brumer, H, van Petegem, F.
Deposit date:2019-06-11
Release date:2020-04-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.818 Å)
Cite:Synergy between Cell Surface Glycosidases and Glycan-Binding Proteins Dictates the Utilization of Specific Beta(1,3)-Glucans by Human GutBacteroides.
Mbio, 11, 2020
5NBP
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BU of 5nbp by Molmil
Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16 in complex with G4G4G3G Product
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glycosyl hydrolase family 16, ...
Authors:Hemsworth, G.R, Tamura, K, Dejean, G, Rogers, T.E, Pudlo, N.A, Urs, K, Jain, N, Martens, E.C, Brumer, H, Davies, G.J.
Deposit date:2017-03-02
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.
Cell Rep, 21, 2017
2UWA
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BU of 2uwa by Molmil
Crystal structure of the Nasturtium seedling xyloglucanase isoform NXG1
Descriptor: CELLULASE, GLYCEROL
Authors:Baumann, M.J, Eklof, J, Michel, G, Kallasa, A, Teeri, T.T, Brumer, H, Czjzek, M.
Deposit date:2007-03-19
Release date:2007-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Evidence for the Evolution of Xyloglucanase Activity from Xyloglucan Endo-Transglycosylases: Biological Implications for Cell Wall Metabolism.
Plant Cell, 19, 2007
6MGJ
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BU of 6mgj by Molmil
Crystal structure of the catalytic domain from GH74 enzyme PoGH74 from Paenibacillus odorifer, apoenzyme
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Stogios, P.J, Skarina, T, Nocek, B, Arnal, G, Brumer, H, Savchenko, A.
Deposit date:2018-09-14
Release date:2019-01-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74endo-xyloglucanase.
Biochem. J., 475, 2018
5OYD
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BU of 5oyd by Molmil
GH5 endo-xyloglucanase from Cellvibrio japonicus
Descriptor: CHLORIDE ION, Cellulase, putative, ...
Authors:Attia, M, Nelson, C.E, Offen, W.A, Jain, N, Gardner, J.G, Davies, G.J, Brumer, H.
Deposit date:2017-09-08
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:In vitro and in vivo characterization of threeCellvibrio japonicusglycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions.
Biotechnol Biofuels, 11, 2018
5OYE
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BU of 5oye by Molmil
GH5 endo-xyloglucanase from Cellvibrio japonicus
Descriptor: CHLORIDE ION, Cellulase, putative, ...
Authors:Attia, M, Nelson, C.E, Offen, W.A, Jain, N, Gardner, J.G, Davies, G.J, Brumer, H.
Deposit date:2017-09-08
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:In vitro and in vivo characterization of threeCellvibrio japonicusglycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions.
Biotechnol Biofuels, 11, 2018
5OYC
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BU of 5oyc by Molmil
GH5 endo-xyloglucanase from Cellvibrio japonicus
Descriptor: CHLORIDE ION, Cellulase, putative, ...
Authors:Attia, M, Nelson, C.E, Offen, W.A, Jain, N, Gardner, J.G, Davies, G.J, Brumer, H.
Deposit date:2017-09-08
Release date:2018-02-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:In vitro and in vivo characterization of threeCellvibrio japonicusglycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions.
Biotechnol Biofuels, 11, 2018
5JOW
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Bacteroides ovatus Xyloglucan PUL GH43A
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Non-reducing end alpha-L-arabinofuranosidase BoGH43A
Authors:Thompson, A.J, Hemsworth, G.R, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016
5JP0
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BU of 5jp0 by Molmil
Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose
Descriptor: Beta-glucosidase BoGH3B, MAGNESIUM ION, beta-D-glucopyranose
Authors:Hemsworth, G.R, Thompson, A.J, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016
5JOU
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BU of 5jou by Molmil
Bacteroides ovatus Xyloglucan PUL GH31
Descriptor: 1,2-ETHANEDIOL, Alpha-xylosidase BoGH31A, NICKEL (II) ION
Authors:Thompson, A.J, Hemsworth, G.R, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016
5JOY
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BU of 5joy by Molmil
Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG
Descriptor: (Z)-L-Arabinonhydroximo-1,4-lactone, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Thompson, A.J, Hemsworth, G.R, Stepper, J, Sobala, L.F, Coyle, T, Larsbrink, J, Spadiut, O, Stubbs, K.A, Brumer, H, Davies, G.J.
Deposit date:2016-05-03
Release date:2016-08-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Open Biology, 6, 2016

 

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