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PDB: 6628 results

6ASI
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BU of 6asi by Molmil
E. coli phosphoenolpyruvate carboxykinase G209S mutant bound to methanesulfonate
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Tang, H.Y.H, Shin, D.S, Tainer, J.A.
Deposit date:2017-08-24
Release date:2018-08-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.789 Å)
Cite:Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase.
Biochemistry, 57, 2018
6AT2
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BU of 6at2 by Molmil
E. coli phosphoenolpyruvate carboxykinase G209N mutant bound to thiosulfate
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tang, H.Y.H, Shin, D.S, Tainer, J.A.
Deposit date:2017-08-27
Release date:2018-08-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.444 Å)
Cite:Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase.
Biochemistry, 57, 2018
6XVU
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BU of 6xvu by Molmil
Bacteriophytochrome response regulator from Deinococcus radiodurans
Descriptor: CALCIUM ION, Response regulator
Authors:Takala, H, Ihalainen, J.A.
Deposit date:2020-01-22
Release date:2021-06-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Comparative analysis of two paradigm bacteriophytochromes reveals opposite functionalities in two-component signaling.
Nat Commun, 12, 2021
7ABS
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BU of 7abs by Molmil
Structure of human DCLRE1C/Artemis in complex with DNA - re-evaluation of 6WO0
Descriptor: DNA (5'-D(*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*GP*CP*T)-3'), Protein artemis, ...
Authors:Newman, J.A, Yosaatmadja, Y, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2020-09-08
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition.
Nucleic Acids Res., 49, 2021
5M9N
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BU of 5m9n by Molmil
Crystal structure of human TDRD1 extended Tudor domain in complex with a symmetrically dimethylated E2F peptide
Descriptor: 1,2-ETHANEDIOL, E2F peptide, N3, ...
Authors:Tallant, C, Savitsky, P, Moehlenbrink, J, Chan, C, Nunez-Alonso, G, Newman, J.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Fedorov, O, La Thangue, N.B, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2016-11-01
Release date:2016-11-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human TDRD1 extended Tudor domain in complex with a symmetrically dimethylated E2F peptide
To Be Published
5MEZ
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BU of 5mez by Molmil
Crystal structure of Smad4-MH1 bound to the GGCT site.
Descriptor: CHLORIDE ION, DNA (5'-D(P*GP*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3'), MH1 domain of human Smad4, ...
Authors:Kaczmarska, Z, Freier, R, Marquez, J.A, Macias, M.J.
Deposit date:2016-11-16
Release date:2017-11-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors.
Nat Commun, 8, 2017
6B8Z
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BU of 6b8z by Molmil
Multiconformer model of WT PTP1B with BB3 at 273 K
Descriptor: 3-(3,5-DIBROMO-4-HYDROXY-BENZOYL)-2-ETHYL-BENZOFURAN-6-SULFONIC ACID [4-(THIAZOL-2-YLSULFAMOYL)-PHENYL]-AMIDE, Tyrosine-protein phosphatase non-receptor type 1
Authors:Keedy, D.A, Hill, Z.B, Biel, J.T, Kang, E, Rettenmaier, T.J, Brandao-Neto, J, von Delft, F, Wells, J.A, Fraser, J.S.
Deposit date:2017-10-09
Release date:2018-06-20
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.
Elife, 7, 2018
6ASM
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BU of 6asm by Molmil
E. coli phosphoenolpyruvate carboxykinase G209S K212C mutant bound to thiosulfate
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tang, H.Y.H, Shin, D.S, Tainer, J.A.
Deposit date:2017-08-25
Release date:2018-08-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase.
Biochemistry, 57, 2018
6AT4
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BU of 6at4 by Molmil
E. coli phosphoenolpyruvate carboxykinase bound to thiosulfate
Descriptor: Phosphoenolpyruvate carboxykinase (ATP), THIOSULFATE
Authors:Tang, H.Y.H, Shin, D.S, Tainer, J.A.
Deposit date:2017-08-27
Release date:2018-08-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.332 Å)
Cite:Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase.
Biochemistry, 57, 2018
6AWN
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BU of 6awn by Molmil
X-ray structure of the S439T human serotonin transporter complexed with paroxetine at the central site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8B6 antibody FAB heavy chain, 8B6 antibody FAB light chain, ...
Authors:Coleman, J.A, Gouaux, E.
Deposit date:2017-09-06
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:Structural basis for recognition of diverse antidepressants by the human serotonin transporter.
Nat. Struct. Mol. Biol., 25, 2018
7JNH
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BU of 7jnh by Molmil
Crystal structure of a double-ENE RNA stability element in complex with a 28-mer poly(A) RNA
Descriptor: 28-mer poly(A) RNA, COBALT HEXAMMINE(III), Core double ENE RNA (Xtal construct) from Oryza sativa transposon,Core double ENE RNA (Xtal construct) from Oryza sativa transposon, ...
Authors:Torabi, S.F, Vaidya, A.T, Tycowski, K.T, DeGregorio, S.J, Wang, J, Shu, M.D, Steitz, T.A, Steitz, J.A.
Deposit date:2020-08-04
Release date:2021-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:RNA stabilization by a poly(A) tail 3'-end binding pocket and other modes of poly(A)-RNA interaction.
Science, 371, 2021
5MMH
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BU of 5mmh by Molmil
The X-Ray Structure of the Effector Domain of the Transcriptional Regulator AmpR of Pseudomonas aeruginosa
Descriptor: HTH-type transcriptional activator AmpR
Authors:Hermoso, J.A, Dominguez gil Velasco, T.
Deposit date:2016-12-09
Release date:2017-01-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Muropeptide Binding and the X-ray Structure of the Effector Domain of the Transcriptional Regulator AmpR of Pseudomonas aeruginosa.
J. Am. Chem. Soc., 139, 2017
6AT3
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BU of 6at3 by Molmil
E. coli phosphoenolpyruvate carboxykinase Y207F mutant bound to thiosulfate and oxaloacetate
Descriptor: OXALOACETATE ION, Phosphoenolpyruvate carboxykinase (ATP), THIOSULFATE
Authors:Tang, H.Y.H, Shin, D.S, Tainer, J.A.
Deposit date:2017-08-27
Release date:2018-08-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.455 Å)
Cite:Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase.
Biochemistry, 57, 2018
6XJY
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BU of 6xjy by Molmil
Crystal structure of a self-alkylating ribozyme - short time incubation with the epoxide substrate
Descriptor: Fab HAVx Heavy Chain, Fab HAVx Light Chain, Self-alkylating ribozyme (58-MER)
Authors:Koirala, D, Piccirilli, J.A.
Deposit date:2020-06-24
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.156 Å)
Cite:Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJQ
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BU of 6xjq by Molmil
Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate
Descriptor: 2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate, Fab HAVx Heavy Chain, Fab HAVx Light Chain, ...
Authors:Koirala, D, Piccirilli, J.A.
Deposit date:2020-06-24
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJZ
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BU of 6xjz by Molmil
Crystal structure of a self-alkylating ribozyme - apo form
Descriptor: Fab HAVx Heavy Chain, Fab HAVx Light Chain, Self-alkylating ribozyme (58-MER)
Authors:Koirala, D, Piccirilli, J.A.
Deposit date:2020-06-24
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.488 Å)
Cite:Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJW
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BU of 6xjw by Molmil
Crystal structure of a self-alkylating ribozyme - alkylated form without biotin moiety
Descriptor: 2-{[(4R)-4-hydroxyhexyl]oxy}ethyl pentanoate, Fab HAVx Heavy Chain, Fab HAVx Light Chain, ...
Authors:Koirala, D, Piccirilli, J.A.
Deposit date:2020-06-24
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.918 Å)
Cite:Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XTT
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BU of 6xtt by Molmil
Solution structure of Legionella pneumophila NttA
Descriptor: NttA
Authors:Portlock, T.J, Garnett, J.A.
Deposit date:2020-01-16
Release date:2020-07-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure, Dynamics and Cellular Insight Into Novel Substrates of theLegionella pneumophilaType II Secretion System.
Front Mol Biosci, 7, 2020
6Y0G
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BU of 6y0g by Molmil
Structure of human ribosome in classical-PRE state
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ...
Authors:Bhaskar, V, Schenk, A.D, Cavadini, S, von Loeffelholz, O, Natchiar, S.K, Klaholz, B.P, Chao, J.A.
Deposit date:2020-02-07
Release date:2020-04-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes.
Cell Rep, 31, 2020
6BAI
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BU of 6bai by Molmil
Multiconformer model of apo K197C PTP1B at 100 K
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Keedy, D.A, Hill, Z.B, Biel, J.T, Kang, E, Rettenmaier, T.J, Brandao-Neto, J, von Delft, F, Wells, J.A, Fraser, J.S.
Deposit date:2017-10-12
Release date:2018-06-20
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.
Elife, 7, 2018
6Y41
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BU of 6y41 by Molmil
Fibrinogen-like globe domain of human ANGPTL2
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Angiopoietin-related protein 2, ...
Authors:Coker, J.A, Krojer, T, Mutisya, J.M, Arrowsmith, C.H, Bountra, C, Midwood, K.S, Yue, W.W, Marsden, B.D, Structural Genomics Consortium (SGC)
Deposit date:2020-02-19
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Fibrinogen-like globe domain of human ANGPTL2
To Be Published
4ZVU
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BU of 4zvu by Molmil
Caspase-7 wild-type bound to the caspase-6 cognate tetrapeptide inhibitor Ac-VEID-cho
Descriptor: Caspase-7, Tetrapeptide Inhibitor Ac-VEID-CHO
Authors:Hardy, J.A, MacPherson, D.J, Hill, M.E.
Deposit date:2015-05-18
Release date:2016-04-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition.
Acs Chem.Biol., 11, 2016
4ZVQ
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BU of 4zvq by Molmil
Caspase-7 Variant 2 (V2) with reprogrammed substrate specificity due to Y230V/W232M/Q276C substitutions bound to VEID inhibitor.
Descriptor: Caspase-7, Peptide ACE-VAL-GLU-ILE-ASA
Authors:Hill, M.E, MacPherson, D.J, Hardy, J.A.
Deposit date:2015-05-18
Release date:2016-04-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition.
Acs Chem.Biol., 11, 2016
6B8E
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BU of 6b8e by Molmil
Multiconformer model of apo WT PTP1B with glycerol at 180 K
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Keedy, D.A, Hill, Z.B, Biel, J.T, Kang, E, Rettenmaier, T.J, Brandao-Neto, J, von Delft, F, Wells, J.A, Fraser, J.S.
Deposit date:2017-10-06
Release date:2018-06-20
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.
Elife, 7, 2018
6YC5
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BU of 6yc5 by Molmil
RT structure of Thaumatin obtained at 1.35 A resolution from crystal grown in a Kapton microchip.
Descriptor: L(+)-TARTARIC ACID, SODIUM ION, Thaumatin-1
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-18
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020

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數據於2024-07-24公開中

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