Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 16 results

6XVU
DownloadVisualize
BU of 6xvu by Molmil
Bacteriophytochrome response regulator from Deinococcus radiodurans
Descriptor: CALCIUM ION, Response regulator
Authors:Takala, H, Ihalainen, J.A.
Deposit date:2020-01-22
Release date:2021-06-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Comparative analysis of two paradigm bacteriophytochromes reveals opposite functionalities in two-component signaling.
Nat Commun, 12, 2021
8BOR
DownloadVisualize
BU of 8bor by Molmil
Photosensory module from DrBphP without PHY tongue
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Kurttila, M, Takala, H, Ihalainen, J.A.
Deposit date:2022-11-15
Release date:2023-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The interconnecting hairpin extension "arm": An essential allosteric element of phytochrome activity.
Structure, 31, 2023
6FTD
DownloadVisualize
BU of 6ftd by Molmil
Deinococcus radiodurans BphP PAS-GAF H290T mutant
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, ...
Authors:Edlund, P, Takala, H, Westenhoff, S, Ihalainen, J.A.
Deposit date:2018-02-21
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Coordination of the biliverdin D-ring in bacteriophytochromes.
Phys Chem Chem Phys, 20, 2018
5NWN
DownloadVisualize
BU of 5nwn by Molmil
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, dark
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Westehoff, S, Ihalainen, J.A.
Deposit date:2017-05-07
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
5NM3
DownloadVisualize
BU of 5nm3 by Molmil
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, pre-illuminated
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Westehoff, S, Ihalainen, J.A.
Deposit date:2017-04-05
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
5NFX
DownloadVisualize
BU of 5nfx by Molmil
Deinococcus radiodurans BphP PAS-GAF Y263F mutant
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, ...
Authors:Takala, H, Westenhoff, S, Ihalainen, J.A.
Deposit date:2017-03-16
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
8C6B
DownloadVisualize
BU of 8c6b by Molmil
Light SFX structure of D.m(6-4)photolyase at 20ps time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C6A
DownloadVisualize
BU of 8c6a by Molmil
Light SFX structure of D.m(6-4)photolyase at 1ps time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C69
DownloadVisualize
BU of 8c69 by Molmil
Light SFX structure of D.m(6-4)photolyase at 100 microsecond time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C6C
DownloadVisualize
BU of 8c6c by Molmil
Light SFX structure of D.m(6-4)photolyase at 300ps time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C6H
DownloadVisualize
BU of 8c6h by Molmil
Light SFX structure of D.m(6-4)photolyase at 2ps time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C1U
DownloadVisualize
BU of 8c1u by Molmil
SFX structure of D.m(6-4)photolyase
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2022-12-21
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
8C6F
DownloadVisualize
BU of 8c6f by Molmil
Light SFX structure of D.m(6-4)photolyase at 400fs time delay
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Cellini, A, Kumar, M, Nimmrich, A, Mutisya, J, Furrer, A, Beale, E.V, Carrillo, M, Malla, T.N, Maj, P, Dworkowskic, F, Cirelli, C, Ozerovi, D, Bacellar, C, Strandfuss, J, Weinert, T, Ihalainen, J.A, Yuan Wahlgren, W, Westenhoff, S.
Deposit date:2023-01-11
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Femtosecond serial crystallography resolves conformational changes which guide long-range electron transfer in a photolyase
To Be Published
4O01
DownloadVisualize
BU of 4o01 by Molmil
Crystal Structure of D. radiodurans Bacteriophytochrome Photosensory Core Module in its Illuminated Form
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Ihalainen, J.A, Westenhoff, S.
Deposit date:2013-12-13
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
4O0P
DownloadVisualize
BU of 4o0p by Molmil
Crystal Structure of D. radiodurans Bacteriophytochrome Photosensory Core Module in its Dark Form
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Ihalainen, J.A, Westenhoff, S.
Deposit date:2013-12-14
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
5K5B
DownloadVisualize
BU of 5k5b by Molmil
Wild-type PAS-GAF fragment from Deinococcus radiodurans BphP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, ...
Authors:Takala, H, Edlund, P, Claesson, E, Ihalainen, J.A, Westenhoff, S.
Deposit date:2016-05-23
Release date:2016-10-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
Sci Rep, 6, 2016

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon