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PDB: 66 results

7LJP
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BU of 7ljp by Molmil
Structure of Thermotoga maritima SmpB
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, SULFATE ION, ...
Authors:Chan, C.W, Mondragon, A.
Deposit date:2021-01-29
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Thermotoga maritima SmpB reveals its C-terminal tail domain in a helical conformation mimicking that of a ribosome-bound state
To Be Published
1W25
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BU of 1w25 by Molmil
Response regulator PleD in complex with c-diGMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, STALKED-CELL DIFFERENTIATION CONTROLLING PROTEIN, ...
Authors:Chan, C, Schirmer, T, Jenal, U.
Deposit date:2004-06-28
Release date:2004-11-18
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of Activity and Allosteric Control of Diguanylate Cyclase
Proc.Natl.Acad.Sci.USA, 101, 2004
2J94
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BU of 2j94 by Molmil
CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
Descriptor: 5-(5-CHLORO-2-THIENYL)-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}-1H-1,2,4-TRIAZOLE-3-SULFONAMIDE, CALCIUM ION, COAGULATION FACTOR X
Authors:Chan, C, Borthwick, A.D, Brown, D, Campbell, M, Chaudry, L, Chung, C.W, Convery, M.A, Hamblin, J.N, Johnstone, L, Kelly, H.A, Kleanthous, S, Burns-Kurtis, C.L, Patikis, A, Patel, C, Pateman, A.J, Senger, S, Shah, G.P, Toomey, J.R, Watson, N.S, Weston, H.E, Whitworth, C, Young, R.J, Zhou, P.
Deposit date:2006-11-02
Release date:2007-03-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Factor Xa Inhibitors: S1 Binding Interactions of a Series of N-{(3S)-1-[(1S)-1-Methyl-2-Morpholin-4-Yl-2-Oxoethyl]-2-Oxopyrrolidin-3-Yl}Sulfonamides.
J.Med.Chem., 50, 2007
2J95
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CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
Descriptor: 5'-CHLORO-N-{(3S)-1-[(1S)-1-METHYL-2-MORPHOLIN-4-YL-2-OXOETHYL]-2-OXOPYRROLIDIN-3-YL}-2,2'-BITHIOPHENE-5-SULFONAMIDE, ACTIVATED FACTOR XA HEAVY CHAIN, ACTIVATED FACTOR XA LIGHT CHAIN, ...
Authors:Chan, C, Borthwick, A.D, Brown, D, Campbell, M, Chaudry, L, Chung, C.W, Convery, M.A, Hamblin, J.N, Johnstone, L, Kelly, H.A, Kleanthous, S, Burns-Kurtis, C.L, Patikis, A, Patel, C, Pateman, A.J, Senger, S, Shah, G.P, Toomey, J.R, Watson, N.S, Weston, H.E, Whitworth, C, Young, R.J, Zhou, P.
Deposit date:2006-11-02
Release date:2007-03-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Factor Xa Inhibitors: S1 Binding Interactions of a Series of N-{(3S)-1-[(1S)-1-Methyl-2-Morpholin-4-Yl-2-Oxoethyl]-2-Oxopyrrolidin-3-Yl}Sulfonamides.
J.Med.Chem., 50, 2007
6CWX
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BU of 6cwx by Molmil
Crystal structure of human ribonuclease P/MRP proteins Rpp20/Rpp25
Descriptor: FORMIC ACID, Ribonuclease P protein subunit p20, Ribonuclease P protein subunit p25, ...
Authors:Chan, C.W, Kiesel, B.R, Mondragon, A.
Deposit date:2018-03-31
Release date:2018-04-18
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Human Rpp20/Rpp25 Reveals Quaternary Level Adaptation of the Alba Scaffold as Structural Basis for Single-stranded RNA Binding.
J. Mol. Biol., 430, 2018
4ZQA
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BU of 4zqa by Molmil
Crystal Structure of the Sds3 Dimerization Domain
Descriptor: Sin3 histone deacetylase corepressor complex component SDS3
Authors:Chan, C.W, Mondragon, A, Clark, M, Radhakrishnan, I.
Deposit date:2015-05-08
Release date:2015-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex.
Proc.Natl.Acad.Sci.USA, 112, 2015
6UGG
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BU of 6ugg by Molmil
Structure of unmodified E. coli tRNA(Asp)
Descriptor: tRNAasp
Authors:Chan, C.W, Mondragon, A.
Deposit date:2019-09-26
Release date:2020-01-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs.
Rna, 26, 2020
3N4Z
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BU of 3n4z by Molmil
Crystal structure of quintuple Arg-to-Lys variant of T. celer L30e
Descriptor: 50S ribosomal protein L30e
Authors:Chan, C.H, Wong, K.B.
Deposit date:2010-05-24
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3973 Å)
Cite:Electrostatic contribution of surface charge residues to the stability of a thermophilic protein: benchmarking experimental and predicted pKa values
Plos One, 7, 2012
3LFO
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BU of 3lfo by Molmil
Crystal structure of T. celer L30e E90A/R92A variant
Descriptor: 50S ribosomal protein L30e
Authors:Chan, C.H, Wong, K.B.
Deposit date:2010-01-18
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding.
Plos One, 6, 2011
3N4Y
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BU of 3n4y by Molmil
Crystal structure of wild-type T. celer L30e in low ionic strength condition without precipitant
Descriptor: 50S ribosomal protein L30e
Authors:Chan, C.H, Wong, K.B.
Deposit date:2010-05-24
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Electrostatic contribution of surface charge residues to the stability of a thermophilic protein: benchmarking experimental and predicted pKa values
Plos One, 7, 2012
6VMY
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BU of 6vmy by Molmil
Structure of the B. subtilis cobalamin riboswitch
Descriptor: Adenosylcobalamin, B. subtilis cobalamin riboswitch, COBALT HEXAMMINE(III), ...
Authors:Chan, C.W, Mondragon, A.
Deposit date:2020-01-28
Release date:2020-06-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal structure of an atypical cobalamin riboswitch reveals RNA structural adaptability as basis for promiscuous ligand binding.
Nucleic Acids Res., 48, 2020
3RA5
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BU of 3ra5 by Molmil
Crystal structure of T. celer L30e E6A/R92A variant
Descriptor: 50S ribosomal protein L30e, SULFATE ION
Authors:Chan, C.H, Wong, K.B.
Deposit date:2011-03-27
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding
Plos One, 6, 2011
5H3D
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BU of 5h3d by Molmil
Helical structure of membrane tubules decorated by ACAP1 (BARPH doamin) protein by cryo-electron microscopy and MD simulation
Descriptor: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1
Authors:Chan, C, Pang, X.Y, Zhang, Y, Sun, F, Fan, J.
Deposit date:2016-10-22
Release date:2019-01-16
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (14 Å)
Cite:ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages.
Plos Comput.Biol., 15, 2019
6UGJ
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BU of 6ugj by Molmil
Crystal structure of a fragment of E. coli tRNA(Asp) consisting of its acceptor stem/T stem-loop. Short unit cell.
Descriptor: DIPHOSPHATE, SULFATE ION, URACIL, ...
Authors:Chan, C.W, Mondragon, A.
Deposit date:2019-09-26
Release date:2020-01-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs.
Rna, 26, 2020
6UGI
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BU of 6ugi by Molmil
Crystal structure of a fragment of E. coli tRNA(Asp) consisting of its acceptor stem/T stem-loop. Long unit cell.
Descriptor: SULFATE ION, tRNA(Asp) acceptor stem/T stem-loop
Authors:Chan, C.W, Mondragon, A.
Deposit date:2019-09-26
Release date:2020-01-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs.
Rna, 26, 2020
7LI0
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BU of 7li0 by Molmil
Crystal structure of apo Moraxella catarrhalis ferric binding protein A in an open conformation
Descriptor: CARBONATE ION, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Chan, C, Ng, D, Fraser, M.E, Schryvers, A.B.
Deposit date:2021-01-26
Release date:2022-02-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and functional insights into iron acquisition from lactoferrin and transferrin in Gram-negative bacterial pathogens.
Biometals, 2022
7LI1
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BU of 7li1 by Molmil
Crystal structure of holo Moraxella catarrhalis ferric binding protein A in an open conformation
Descriptor: CARBONATE ION, FE (III) ION, Fe(3+) ABC transporter substrate-binding protein
Authors:Chan, C, Ng, D, Fraser, M.E, Schryvers, A.B.
Deposit date:2021-01-26
Release date:2022-02-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into iron acquisition from lactoferrin and transferrin in Gram-negative bacterial pathogens.
Biometals, 2022
4KQI
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BU of 4kqi by Molmil
Crystal structure of CobT E317A complexed with its reaction products
Descriptor: 1,2-ETHANEDIOL, ALPHA-RIBAZOLE-5'-PHOSPHATE, NICOTINIC ACID, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
4KQG
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BU of 4kqg by Molmil
Crystal structure of CobT E174A complexed with DMB
Descriptor: 1,2-ETHANEDIOL, 5,6-DIMETHYLBENZIMIDAZOLE, Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
4KQF
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BU of 4kqf by Molmil
Crystal structure of CobT E174A complexed with adenine
Descriptor: 1,2-ETHANEDIOL, ADENINE, Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
4KQH
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BU of 4kqh by Molmil
Crystal structure of CobT E317A
Descriptor: 1,2-ETHANEDIOL, Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, PHOSPHATE ION, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
4KQJ
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BU of 4kqj by Molmil
Crystal structure of CobT S80Y/Q88M/L175M complexed with p-cresol and NaMN
Descriptor: NICOTINATE MONONUCLEOTIDE, Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, P-CRESOL, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
4KQK
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BU of 4kqk by Molmil
Crystal structure of CobT S80Y/Q88M/L175M complexed with p-cresol
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, ...
Authors:Chan, C.H, Newmister, S.A, Taylor, K.C, Claas, K.R, Rayment, I, Escalante-Semerena, J.C.
Deposit date:2013-05-15
Release date:2014-03-12
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.
Biochim.Biophys.Acta, 1840, 2014
3RA6
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BU of 3ra6 by Molmil
Crystal structure of T. celer L30e E62A/K46A variant
Descriptor: 50S ribosomal protein L30e
Authors:Chan, C.H, Yu, T.H, Wong, K.B.
Deposit date:2011-03-27
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding
Plos One, 6, 2011
8D9M
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BU of 8d9m by Molmil
Cryo-EM of the OmcZ nanowires from Geobacter sulfurreducens
Descriptor: Cytochrome c, HEME C
Authors:Wang, F, Chan, C.H, Mustafa, K, Hochbaum, A.I, Bond, D.R, Egelman, E.H.
Deposit date:2022-06-10
Release date:2022-09-14
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times.
Elife, 11, 2022

 

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