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PDB: 26 results

7V3C
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BU of 7v3c by Molmil
Crystal structure of NP exonuclease C409A-PCMB complex
Descriptor: 4-(HYDROXYMERCURY)BENZOIC ACID, MAGNESIUM ION, Nucleoprotein, ...
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
7V39
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BU of 7v39 by Molmil
Crystal structure of NP exonuclease-PCMB complex
Descriptor: 4-(HYDROXYMERCURY)BENZOIC ACID, Nucleoprotein, ZINC ION
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
7V3A
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BU of 7v3a by Molmil
Crystal structure of apo-NP exonuclease C409A
Descriptor: MAGNESIUM ION, Nucleoprotein, ZINC ION
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
7V37
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BU of 7v37 by Molmil
Crystal structure of apo-NP exonuclease
Descriptor: Nucleoprotein, ZINC ION
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
7V3B
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BU of 7v3b by Molmil
Crystal structure of NP exonuclease C409A-PCMPS complex
Descriptor: MAGNESIUM ION, Nucleoprotein, PARA-MERCURY-BENZENESULFONIC ACID, ...
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
7V38
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BU of 7v38 by Molmil
Crystal structure of NP exonuclease-PCMPS complex
Descriptor: Nucleoprotein, PARA-MERCURY-BENZENESULFONIC ACID, ZINC ION
Authors:Hsiao, Y.Y, Huang, K.W.
Deposit date:2021-08-10
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:Targeted Covalent Inhibitors Allosterically Deactivate the DEDDh Lassa Fever Virus NP Exonuclease from Alternative Distal Sites.
Jacs Au, 1, 2021
8HCG
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BU of 8hcg by Molmil
Crystal structure of mTREX1-dAMP complex
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
8HCH
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BU of 8hch by Molmil
Crystal structure of mTREX1-Uridine complex
Descriptor: MAGNESIUM ION, Three-prime repair exonuclease 1, URIDINE
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
8HCD
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BU of 8hcd by Molmil
Crystal structure of mTREX1-DNA product complex (dNMP)
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, COBALT (II) ION, ...
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
8HCF
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BU of 8hcf by Molmil
Crystal structure of mTREX1-UMP complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, Three-prime repair exonuclease 1, ...
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
8HCC
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BU of 8hcc by Molmil
Crystal structure of mTREX1-RNA product complex (AMP)
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, SODIUM ION, ...
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
8HCE
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BU of 8hce by Molmil
Crystal structure of mTREX1-CMP complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AMMONIUM ION, CYTIDINE-5'-MONOPHOSPHATE, ...
Authors:Hsiao, Y.Y, Huang, K.W, Wu, C.Y.
Deposit date:2022-11-01
Release date:2023-11-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.
Nucleic Acids Res., 51, 2023
5E2J
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BU of 5e2j by Molmil
Crystal structure of single mutant thermostable endoglucanase (D468A) from Alicyclobacillus acidocaldarius
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Endoglucanase, ...
Authors:Hsiao, Y.Y, Wang, H.J, Tseng, C.P.
Deposit date:2015-10-01
Release date:2016-02-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Polarity Alteration of a Calcium Site Induces a Hydrophobic Interaction Network and Enhances Cel9A Endoglucanase Thermostability.
Appl.Environ.Microbiol., 82, 2016
5YWV
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BU of 5ywv by Molmil
Crystal structure of TREX1 in complex with a inosine contained ssDNA
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, INOSINE CONTAINED SSDNA, ...
Authors:Hsiao, Y.Y.
Deposit date:2017-11-30
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol., 16, 2018
5YWT
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BU of 5ywt by Molmil
Crystal structure of TREX1 in complex with a duplex DNA with 3' overhang
Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*T)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2017-11-30
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol., 16, 2018
5YWU
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BU of 5ywu by Molmil
Crystal structure of TREX1 in complex with a inosine contained dsDNA
Descriptor: INOSINE CONTAINED DSDNAS, MAGNESIUM ION, Three-prime repair exonuclease 1
Authors:Hsiao, Y.Y.
Deposit date:2017-11-30
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol., 16, 2018
5YWS
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BU of 5yws by Molmil
Crystal structure of TREX1 in complex with a Y structured DNA
Descriptor: A STEM LOOP DNA WITH Y-STRUCTURAL TERMINAL, MAGNESIUM ION, Three-prime repair exonuclease 1
Authors:Hsiao, Y.Y.
Deposit date:2017-11-30
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol., 16, 2018
6A46
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BU of 6a46 by Molmil
Structure of TREX2 in complex with a nucleotide (dCMP)
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A4B
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BU of 6a4b by Molmil
Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang
Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A47
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BU of 6a47 by Molmil
Structure of TREX2 in complex with a Y structured dsDNA
Descriptor: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A45
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BU of 6a45 by Molmil
Structure of mouse TREX2
Descriptor: PHOSPHATE ION, Three prime repair exonuclease 2
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6KYC
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BU of 6kyc by Molmil
Structure of the S207A mutant of Clostridium difficile sortase B
Descriptor: Putative peptidase C60B, sortase B
Authors:Kang, C.Y, Huang, I.H, Wu, T.Y, Chang, J.C, Hsiao, Y.Y, Cheng, C.H, Tsai, W.J, Hsu, K.C, Wang, S.Y.
Deposit date:2019-09-17
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Functional analysis ofClostridium difficilesortase B reveals key residues for catalytic activity and substrate specificity.
J.Biol.Chem., 295, 2020
6KYD
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BU of 6kyd by Molmil
Structure of the R217A mutant of Clostridium difficile sortase B
Descriptor: Putative peptidase C60B, sortase B
Authors:Kang, C.Y, Huang, I.H, Wu, T.Y, Chang, J.C, Hsiao, Y.Y, Cheng, C.H, Tsai, W.J, Hsu, K.C, Wang, S.Y.
Deposit date:2019-09-18
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Functional analysis ofClostridium difficilesortase B reveals key residues for catalytic activity and substrate specificity.
J.Biol.Chem., 295, 2020
7CD6
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BU of 7cd6 by Molmil
mAPE1-recessed dsDNA product complex
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*AP*C)-3'), DNA-(apurinic or apyrimidinic site) endonuclease
Authors:Liu, T.C, Hsiao, Y.Y.
Deposit date:2020-06-18
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling.
Nat Commun, 12, 2021
7CD5
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BU of 7cd5 by Molmil
mAPE1-blunt-ended dsDNA product complex
Descriptor: DNA(5'-D(*CP*GP*TP*AP*AP*TP*AP*CP*G)-3'), DNA-(apurinic or apyrimidinic site) endonuclease
Authors:Liu, T.C, Hsiao, Y.Y.
Deposit date:2020-06-18
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling.
Nat Commun, 12, 2021

 

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