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PDB: 52 results

8YR4
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BU of 8yr4 by Molmil
Cryo-EM structure of the human ABCB6 in complex with Cd(II):Phytochelatin 2
Descriptor: ATP-binding cassette sub-family B member 6, CADMIUM ION, GAMMA-D-GLUTAMIC ACID, ...
Authors:Choi, S.H, Lee, S.S, Lee, H.Y, Kim, S, Kim, J.W, Jin, M.S.
Deposit date:2024-03-20
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of cadmium-bound human ABCB6.
Commun Biol, 7, 2024
8YR3
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BU of 8yr3 by Molmil
Cryo-EM structure of the human ABCB6 in complex with Cd(II):GSH
Descriptor: ATP-binding cassette sub-family B member 6, CADMIUM ION, GLUTATHIONE
Authors:Choi, S.H, Lee, S.S, Lee, H.Y, Kim, S, Kim, J.W, Jin, M.S.
Deposit date:2024-03-20
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of cadmium-bound human ABCB6.
Commun Biol, 7, 2024
7CJ2
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BU of 7cj2 by Molmil
Crystal structure of the Fab antibody complexed with human YKL-40
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase 3-like 1 (Cartilage glycoprotein-39), isoform CRA_a, ...
Authors:Choi, S, Na, J.H, Lee, S.J, Woo, J.R, Kim, D.Y, Hong, J.T, Lee, W.K.
Deposit date:2020-07-09
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the Fab antibody complexed with human YKL-40
To Be Published
6QBY
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BU of 6qby by Molmil
Crystal structure of VASH 2 in complex with SVBP
Descriptor: Small vasohibin-binding protein, Tubulinyl-Tyr carboxypeptidase 2
Authors:Choi, S.R, Olieric, V, Steinmetz, M.O, Olieric, N.
Deposit date:2018-12-24
Release date:2019-04-24
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural basis of tubulin detyrosination by the vasohibin-SVBP enzyme complex.
Nat.Struct.Mol.Biol., 26, 2019
7ZCW
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BU of 7zcw by Molmil
Cryo-EM structure of GMPCPP-microtubules in complex with VASH2-SVBP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Choi, S.R, Blum, T, Steinmetz, M.O.
Deposit date:2022-03-29
Release date:2022-12-14
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:VASH1-SVBP and VASH2-SVBP generate different detyrosination profiles on microtubules.
J.Cell Biol., 222, 2023
5HTO
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BU of 5hto by Molmil
Crystal structure of Plasmodium Vivax LDH in complex with a DNA aptamer called pL1 (tetrameric LDH in an asymmetric unit)
Descriptor: DNA (30-MER), DNA (34-MER), L-lactate dehydrogenase, ...
Authors:Choi, S.J, Ban, C.
Deposit date:2016-01-27
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a DNA aptamer bound to PvLDH elucidates novel single-stranded DNA structural elements for folding and recognition
Sci Rep, 6, 2016
5HS4
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BU of 5hs4 by Molmil
Plasmdoium Vivax Lactate dehydrogenase
Descriptor: L-lactate dehydrogenase
Authors:Choi, S.J, Ban, C.
Deposit date:2016-01-25
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.339 Å)
Cite:Crystal structure of a DNA aptamer bound to PvLDH elucidates novel single-stranded DNA structural elements for folding and recognition
Sci Rep, 6, 2016
5HRU
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BU of 5hru by Molmil
Crystal structure of Plasmodium vivax LDH in complex with a DNA aptamer called pL1
Descriptor: DNA (32-MER), L-lactate dehydrogenase, MAGNESIUM ION
Authors:Choi, S.J, Ban, C.
Deposit date:2016-01-24
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of a DNA aptamer bound to PvLDH elucidates novel single-stranded DNA structural elements for folding and recognition
Sci Rep, 6, 2016
3W5K
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BU of 3w5k by Molmil
Crystal structure of Snail1 and importin beta complex
Descriptor: Importin subunit beta-1, ZINC ION, Zinc finger protein SNAI1
Authors:Choi, S, Yamashita, E, Yasuhara, N, Song, J, Son, S.Y, Won, Y.H, Shin, Y.S, Sekimoto, T, Park, I.Y, Yoneda, Y, Lee, S.J.
Deposit date:2013-01-30
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the selective nuclear import of the C2H2 zinc-finger protein Snail by importin beta.
Acta Crystallogr.,Sect.D, 70, 2014
7E42
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BU of 7e42 by Molmil
Solution strucutre of holo acyl carrier protein from Acinetobacter baumannii
Descriptor: Acyl carrier protein
Authors:Choi, S, Park, J, Kim, Y.
Deposit date:2021-02-10
Release date:2022-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:solution structure of holo acyl carrier protein in acinetobacter baumannii
To Be Published
3GOP
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BU of 3gop by Molmil
Crystal structure of the EGF receptor juxtamembrane and kinase domains
Descriptor: Epidermal growth factor receptor
Authors:Choi, S.H, Alvarado, D, Moravcevic, K, Lemmon, M.A.
Deposit date:2009-03-19
Release date:2009-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The juxtamembrane region of the EGF receptor functions as an activation domain.
Mol.Cell, 34, 2009
8HNJ
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BU of 8hnj by Molmil
Domain-stabilized glutamine-binding protein
Descriptor: GLUTAMINE, Glutamine ABC transporter, periplasmic glutamine-binding protein GlnH
Authors:Choi, S.H, Park, J.H, Seo, M.H, Park, K.W, Lee, W.K.
Deposit date:2022-12-08
Release date:2023-07-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Domain-wise dissection of thermal stability enhancement in multidomain proteins.
Int.J.Biol.Macromol., 237, 2023
8KA0
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BU of 8ka0 by Molmil
Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin and a nicotinamide adenine dinucleotide (NAD+)
Descriptor: CALCIUM ION, Calmodulin-2, GLYCEROL, ...
Authors:Lee, Y, Choi, S, Hwang, J, Kim, M.H.
Deposit date:2023-08-02
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
8KA2
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BU of 8ka2 by Molmil
Crystal structure of the RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) from Vibrio vulnificus
Descriptor: RDTND-RID CBD
Authors:Lee, Y, Choi, S, Hwang, J, Kim, M.H.
Deposit date:2023-08-02
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
8K9Z
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BU of 8k9z by Molmil
Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin
Descriptor: CALCIUM ION, Calmodulin-2, RDTND-RID CBD
Authors:Lee, Y, Choi, S, Hwang, J, Kim, M.H.
Deposit date:2023-08-02
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
8KA1
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BU of 8ka1 by Molmil
Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-free calmodulin
Descriptor: Calmodulin-2, MAGNESIUM ION, RDTND-RID CBD
Authors:Lee, Y, Choi, S, Hwang, J, Kim, M.H.
Deposit date:2023-08-02
Release date:2024-07-10
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun, 15, 2024
1QXH
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BU of 1qxh by Molmil
Crystal Structure of Escherichia coli Thiol Peroxidase in the Oxidized State
Descriptor: Thiol peroxidase
Authors:Choi, J, Choi, S, Choi, J, Shin, W.
Deposit date:2003-09-06
Release date:2004-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Escherichia coli thiol peroxidase in the oxidized state: insights into intramolecular disulfide formation and substrate binding in atypical 2-Cys peroxiredoxins
J.Biol.Chem., 278, 2003
2A4V
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BU of 2a4v by Molmil
Crystal Structure of a truncated mutant of yeast nuclear thiol peroxidase
Descriptor: Peroxiredoxin DOT5
Authors:Choi, J, Choi, S, Chon, J.-K, Choi, J, Cha, M.-K, Kim, I.-H, Shin, W.
Deposit date:2005-06-29
Release date:2006-03-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin
Proteins, 61, 2005
5TZL
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BU of 5tzl by Molmil
Structure of transthyretin in complex with the kinetic stabilizer 201
Descriptor: 4-(7-chloro-1,3-benzoxazol-2-yl)-2,6-diiodophenol, Transthyretin
Authors:Connelly, S, Mortenson, D.E, Choi, S, Wilson, I.A, Powers, E.T, Kelly, J.W, Johnson, S.M.
Deposit date:2016-11-21
Release date:2017-06-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Semi-quantitative models for identifying potent and selective transthyretin amyloidogenesis inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
8CU6
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BU of 8cu6 by Molmil
Crystal structure of A2AAR-StaR2-S277-bRIL in complex with a novel A2a antagonist, LJ-4517
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol, Adenosine receptor A2a,Soluble cytochrome b562, ...
Authors:Shiriaeva, A, Park, D.-J, Kim, G, Lee, Y, Hou, X, Jarhad, D.B, Kim, G, Yu, J, Hyun, Y.E, Kim, W, Gao, Z.-G, Jacobson, K.A, Han, G.W, Stevens, R.C, Jeong, L.S, Choi, S, Cherezov, V.
Deposit date:2022-05-16
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A 2A Adenosine Receptor.
J.Med.Chem., 65, 2022
8CU7
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BU of 8cu7 by Molmil
Crystal structure of A2AAR-StaR2-bRIL in complex with a novel A2a antagonist, LJ-4517
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol, Adenosine receptor A2a,Soluble cytochrome b562, ...
Authors:Shiriaeva, A, Park, D.-J, Kim, G, Lee, Y, Hou, X, Jarhad, D.B, Kim, G, Yu, J, Hyun, Y.E, Kim, W, Gao, Z.-G, Jacobson, K.A, Han, G.W, Stevens, R.C, Jeong, L.S, Choi, S, Cherezov, V.
Deposit date:2022-05-16
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A 2A Adenosine Receptor.
J.Med.Chem., 65, 2022
8K7C
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BU of 8k7c by Molmil
Outward-facing structure of human ABCB6 W546A mutant (ADP/VO4-bound)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding cassette sub-family B member 6, MAGNESIUM ION, ...
Authors:Jin, M.S, Lee, S.S, Park, J.G, Jang, E, Choi, S.H, Kim, S, Kim, J.W.
Deposit date:2023-07-26
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:W546 stacking disruption traps the human porphyrin transporter ABCB6 in an outward-facing transient state.
Commun Biol, 6, 2023
8K7B
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BU of 8k7b by Molmil
post-occluded structure of human ABCB6 W546A mutant (ADP/VO4-bound)
Descriptor: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, ADP ORTHOVANADATE, ATP-binding cassette sub-family B member 6, ...
Authors:Jin, M.S, Lee, S.S, Park, J.G, Jang, E, Choi, S.H, Kim, S, Kim, J.W.
Deposit date:2023-07-26
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:W546 stacking disruption traps the human porphyrin transporter ABCB6 in an outward-facing transient state.
Commun Biol, 6, 2023
8GSI
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BU of 8gsi by Molmil
Structure of the cobolimab Fab
Descriptor: heavy chain, light chain, nanobody
Authors:Heo, Y.S, Choi, S.B.
Deposit date:2022-09-06
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the Fab fragment of cobolimab, an investigational antibody targeting Tim-3 for immune-oncology.
To Be Published
7V5C
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BU of 7v5c by Molmil
Cryo-EM structure of the mouse ABCB9 (ADP.BeF3-bound)
Descriptor: ABC-type oligopeptide transporter ABCB9, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Park, J.G, Kim, S, Jang, E, Choi, S.H, Han, H, Kim, J.W, Ju, S, Min, D.S, Jin, M.S.
Deposit date:2021-08-17
Release date:2022-10-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The lysosomal transporter TAPL has a dual role as peptide translocator and phosphatidylserine floppase.
Nat Commun, 13, 2022

 

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PDB entries from 2024-08-21

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