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PDB: 103 results

7S6S
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BU of 7s6s by Molmil
Complex structure of Methane monooxygenase hydroxylase and regulatory subunit DBL1
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, FE (III) ION, ...
Authors:Johns, J.C, Banerjee, R, Semonis, M.M, Shi, K, Aihara, H, Lipscomb, J.D.
Deposit date:2021-09-14
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulatory Component: Correlations with Altered Reaction Cycle Dynamics.
Biochemistry, 61, 2022
8STW
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BU of 8stw by Molmil
K384N HUMAN CYSTATHIONINE BETA-SYNTHASE (delta 411-551)
Descriptor: Cystathionine beta-synthase, K384N variant, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Mascarenhas, R, Roman, J, Banerjee, R.
Deposit date:2023-05-11
Release date:2023-11-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Disease-causing cystathionine beta-synthase linker mutations impair allosteric regulation.
J.Biol.Chem., 299, 2023
1JAC
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BU of 1jac by Molmil
A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A MORACEAE PLANT LECTIN WITH A BETA-PRISM
Descriptor: JACALIN, methyl alpha-D-galactopyranoside
Authors:Sankaranarayanan, R, Sekar, K, Banerjee, R, Sharma, V, Surolia, A, Vijayan, M.
Deposit date:1996-05-22
Release date:1997-06-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:A novel mode of carbohydrate recognition in jacalin, a Moraceae plant lectin with a beta-prism fold.
Nat.Struct.Biol., 3, 1996
3BT8
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BU of 3bt8 by Molmil
Crystal Structure of Mutant Cyclophilin (R147A) from Leishmania donovani
Descriptor: Peptidyl-prolyl cis-trans isomerase
Authors:Venugopal, V, Sen, B, Datta, A.K, Banerjee, R.
Deposit date:2007-12-28
Release date:2008-01-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Mutant Cyclophilin from Leishmania Donovani
To be Published
4A91
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BU of 4a91 by Molmil
Crystal structure of the glutamyl-queuosine tRNAAsp synthetase from E. coli complexed with L-glutamate
Descriptor: GLUTAMIC ACID, GLUTAMYL-Q TRNA(ASP) SYNTHETASE, ZINC ION
Authors:Blaise, M, Olieric, V, Sauter, C, Lorber, B, Roy, B, Karmakar, S, Banerjee, R, Becker, H.D, Kern, D.
Deposit date:2011-11-22
Release date:2012-01-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Glutamyl-Queuosine Trnaasp Synthetase Complexed with L-Glutamate: Structural Elements Mediating tRNA-Independent Activation of Glutamate and Glutamylation of Trnaasp Anticodon.
J.Mol.Biol., 381, 2008
2HAQ
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BU of 2haq by Molmil
Crystal Structure of Cyclophilin A from Leishmania Donovani
Descriptor: Cyclophilin
Authors:Venugopal, V, Sen, B, Datta, A.K, Banerjee, R.
Deposit date:2006-06-13
Release date:2006-06-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure of cyclophilin from Leishmania donovani at 1.97 A resolution.
Acta Crystallogr.,Sect.F, 63, 2007
8DHK
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BU of 8dhk by Molmil
Crystal structure of human Sulfide Quinone Oxidoreductase K207E
Descriptor: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Mascarenhas, R.N, Ludlum, A, Banerjee, R.
Deposit date:2022-06-27
Release date:2023-07-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Sulfide oxidation in human sulfide quinone oxidoreductase is enthalpically driven: Contributions of the Lys-207 general base
To Be Published
8DYJ
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BU of 8dyj by Molmil
Crystal structure of human methylmalonyl-CoA mutase in complex with ADP and cob(II)alamin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, COBALAMIN, Methylmalonyl-CoA mutase, ...
Authors:Mascarenhas, R.N, Gouda, H, Banerjee, R.
Deposit date:2022-08-04
Release date:2023-07-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bivalent molecular mimicry by ADP protects metal redox state and promotes coenzyme B 12 repair.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DYL
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BU of 8dyl by Molmil
Crystal structure of human methylmalonyl-CoA mutase bound to aquocobalamin
Descriptor: COBALAMIN, GLYCEROL, Methylmalonyl-CoA mutase, ...
Authors:Mascarenhas, R.N, Gouda, H, Banerjee, R.
Deposit date:2022-08-04
Release date:2023-07-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bivalent molecular mimicry by ADP protects metal redox state and promotes coenzyme B 12 repair.
Proc.Natl.Acad.Sci.USA, 120, 2023
8D32
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BU of 8d32 by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to 5-deoxyadenosylrhodibalamin and PPPi
Descriptor: 5'-DEOXYADENOSINE, Corrinoid adenosyltransferase, MAGNESIUM ION, ...
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2022-05-31
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A noble substitution leads to the cofactor mimicry by rhodibalamin
To Be Published
1M54
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BU of 1m54 by Molmil
CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS
Descriptor: CYSTATHIONINE BETA-SYNTHASE, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE
Authors:Taoka, S, Lepore, B.W, Kabil, O, Ojha, S, Ringe, D, Banerjee, R.
Deposit date:2002-07-08
Release date:2002-08-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:HUMAN CYSTATHIONINE BETA-SYNTHASE IS A HEME SENSOR PROTEIN. EVIDENCE THAT THE REDOX SENSOR IS HEME AND NOT THE VICINAL CYSTEINES IN THE CXXC MOTIF SEEN IN THE CRYSTAL STRUCTURE OF THE TRUNCATED ENZYME
BIOCHEMISTRY, 41, 2002
3EOV
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BU of 3eov by Molmil
Crystal structure of cyclophilin from Leishmania donovani ligated with cyclosporin A
Descriptor: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Authors:Venugopal, V, Dasgupta, D, Datta, A.K, Banerjee, R.
Deposit date:2008-09-29
Release date:2008-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Cyclophilin from Leishmania Donovani Bound to Cyclosporin at 2.6 A Resolution: Correlation between Structure and Thermodynamic Data.
Acta Crystallogr.,Sect.D, 65, 2009
8GJU
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BU of 8gju by Molmil
Crystal structure of human methylmalonyl-CoA mutase (MMUT) in complex with methylmalonic acidemia type A protein (MMAA), coenzyme A, and GDP
Descriptor: COENZYME A, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Mascarenhas, R.M, Ruetz, M, Gouda, H, Yaw, M, Banerjee, R.
Deposit date:2023-03-16
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Architecture of the human G-protein-methylmalonyl-CoA mutase nanoassembly for B 12 delivery and repair.
Nat Commun, 14, 2023
8HQC
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BU of 8hqc by Molmil
Structure of a GPCR-G protein in complex with a natural peptide agonist
Descriptor: Antibody fragment, C5a anaphylatoxin, C5a anaphylatoxin chemotactic receptor 1, ...
Authors:Saha, S, Maharana, J, Yadav, M.K, Sarma, P, Chami, M, Banerjee, R, Shukla, A.K.
Deposit date:2022-12-13
Release date:2023-10-18
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors.
Cell, 186, 2023
8HPT
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BU of 8hpt by Molmil
Structure of C5a-pep bound mouse C5aR1 in complex with Go
Descriptor: Antibody fragment ScFv16, C5a anaphylatoxin chemotactic receptor 1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Saha, S, Maharana, J, Yadav, M.K, Sarma, P, Chami, M, Banerjee, R, Shukla, A.K.
Deposit date:2022-12-13
Release date:2023-10-18
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors.
Cell, 186, 2023
6L2B
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BU of 6l2b by Molmil
Crystal structure of cyclophilin mutant I164M from Leishmania donovani at 2.65 angstrom resolution
Descriptor: Peptidyl-prolyl cis-trans isomerase
Authors:Ghosh, S, Biswas, G, Datta, A.K, Banerjee, R.
Deposit date:2019-10-03
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of cyclophilin mutant I164M from Leishmania donovani at 2.65 angstrom resolution.
To Be Published
6OXC
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BU of 6oxc by Molmil
Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Methylmalonyl-CoA mutase large subunit, ...
Authors:Purchal, M, Ruetz, M, Banerjee, R, Koutmos, M.
Deposit date:2019-05-13
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair.
Science, 366, 2019
8GO8
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BU of 8go8 by Molmil
Structure of beta-arrestin1 in complex with a phosphopeptide corresponding to the human C5a anaphylatoxin chemotactic receptor 1, C5aR1
Descriptor: Beta-arrestin-1, C5a anaphylatoxin chemotactic receptor 1, Fab30 heavy chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-24
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
8GOO
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BU of 8goo by Molmil
Structure of beta-arrestin2 in complex with a phosphopeptide corresponding to the human C5a anaphylatoxin chemotactic receptor 1, C5aR1
Descriptor: Beta-arrestin-2, C5a anaphylatoxin chemotactic receptor 1, Fab30 Heavy Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-25
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
5CV0
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BU of 5cv0 by Molmil
Crystal structure of N-terminal truncated human B12-chaperone CblD (108-296)
Descriptor: Methylmalonic aciduria and homocystinuria type D protein, mitochondrial
Authors:Yamada, K, Gherasim, C, Banerjee, R, Koutmos, M.
Deposit date:2015-07-24
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Human B12 Trafficking Protein CblD Reveals Molecular Mimicry and Identifies a New Subfamily of Nitro-FMN Reductases.
J.Biol.Chem., 290, 2015
5CUZ
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BU of 5cuz by Molmil
Crystal structure of SeMet-substituted N-terminal truncated human B12-chaperone CblD (108-296)
Descriptor: Methylmalonic aciduria and homocystinuria type D protein, mitochondrial
Authors:Yamada, K, Gherasim, C, Banerjee, R, Koutmos, M.
Deposit date:2015-07-25
Release date:2015-09-23
Last modified:2015-12-16
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure of Human B12 Trafficking Protein CblD Reveals Molecular Mimicry and Identifies a New Subfamily of Nitro-FMN Reductases.
J.Biol.Chem., 290, 2015
8GOC
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BU of 8goc by Molmil
Structure of beta-arrestin2 in complex with a phosphopeptide corresponding to the human Vasopressin V2 receptor, V2R
Descriptor: Beta-arrestin-2, Fab30 Heavy Chain, Fab30 Light Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-24
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
8GP3
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BU of 8gp3 by Molmil
Structure of beta-arrestin1 in complex with a phosphopeptide corresponding to the human C-X-C chemokine receptor type 4, CXCR4
Descriptor: Beta-arrestin-1, C-X-C chemokine receptor type 4, Fab30 Heavy Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-25
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
6NBA
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BU of 6nba by Molmil
Crystal structure of Human Cystathionine gamma lyase with S-3-Carboxpropyl-L-Cysteine
Descriptor: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID, Cystathionine gamma-lyase
Authors:Kim, H, Yadav, P.K, Banerjee, R, Cho, U.-S.
Deposit date:2018-12-06
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:S-3-Carboxypropyl-l-cysteine specifically inhibits cystathionine gamma-lyase-dependent hydrogen sulfide synthesis.
J.Biol.Chem., 294, 2019
6OXD
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BU of 6oxd by Molmil
Structure of Mycobacterium tuberculosis methylmalonyl-CoA mutase with adenosyl cobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Itaconyl coenzyme A, ...
Authors:Purchal, M, Ruetz, M, Banerjee, R, Koutmos, M.
Deposit date:2019-05-13
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair.
Science, 366, 2019

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