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PDB: 89346 results

4QQK
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BU of 4qqk by Molmil
Human HMT1 hnRNP methyltransferase-like protein 6 (S. cerevisiae) with GMS
Descriptor: (5S)-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}-N~6~-carbamimidoyl-L-lysine, GLYCEROL, Protein arginine N-methyltransferase 6, ...
Authors:Dong, A, Zeng, H, He, H, Wernimont, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Min, J, Luo, M, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural basis of arginine asymmetrical dimethylation by PRMT6.
Biochem. J., 473, 2016
7RDH
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BU of 7rdh by Molmil
Crystal structure of the de novo designed binding protein H3mb in complex with the 1968 influenza A virus hemagglutinin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, De novo designed protein H3mb, ...
Authors:Kadam, R.U, Wilson, I.A.
Deposit date:2021-07-09
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Design of protein-binding proteins from the target structure alone.
Nature, 605, 2022
8DYU
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BU of 8dyu by Molmil
Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
Authors:Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E.
Deposit date:2022-08-05
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structures of human dynein in complex with the lissencephaly 1 protein, LIS1.
Elife, 12, 2023
7MGN
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BU of 7mgn by Molmil
Crystal structure of F501H/H506E variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus
Descriptor: 1-THIOETHANESULFONIC ACID, 2-oxopropyl-CoM reductase, carboxylating, ...
Authors:Zadvornyy, O.A, Prussia, G, Peters, J.W.
Deposit date:2021-04-12
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The unique Phe-His dyad of 2-ketopropyl coenzyme M oxidoreductase/carboxylase selectively promotes carboxylation and S-C bond cleavage.
J.Biol.Chem., 297, 2021
8GB1
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BU of 8gb1 by Molmil
Crystal structure of SAMHD1 dimer bound to deoxyguanosine linked inhibitor
Descriptor: 5'-O-[(R)-(3-{[(1M)-3'-bromo[1,1'-biphenyl]-3-carbonyl]amino}propoxy)(hydroxy)phosphoryl]-2'-deoxyguanosine, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION
Authors:Egleston, M, Dong, L, Howlader, A.H, Bhat, S, Orris, B, Bianchet, M.A, Greenberg, M.M, Stivers, J.T.
Deposit date:2023-02-24
Release date:2023-06-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Deoxyguanosine-Linked Bifunctional Inhibitor of SAMHD1 dNTPase Activity and Nucleic Acid Binding.
Acs Chem.Biol., 18, 2023
5MF5
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BU of 5mf5 by Molmil
PA3825-EAL Mg-CdG Structure
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Diguanylate phosphodiesterase, MAGNESIUM ION
Authors:Horrell, S, Bellini, D, Strange, R, Wagner, A, Walsh, M.
Deposit date:2016-11-17
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Dimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases.
Sci Rep, 7, 2017
7MGO
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BU of 7mgo by Molmil
Crystal structure of F501H variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus
Descriptor: 1-THIOETHANESULFONIC ACID, 2-oxopropyl-CoM reductase, carboxylating, ...
Authors:Prussia, G, Zadvornyy, O.A, Peters, J.W.
Deposit date:2021-04-13
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The unique Phe-His dyad of 2-ketopropyl coenzyme M oxidoreductase/carboxylase selectively promotes carboxylation and S-C bond cleavage.
J.Biol.Chem., 297, 2021
8AEL
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BU of 8ael by Molmil
SYNJ2BP complex with a synthetic Vangl2 peptide (3mer).
Descriptor: CALCIUM ION, GLY-GLY-GLY-THR-SER-VAL, GLYCEROL, ...
Authors:Carrasco, K, Cousido Siah, A, Gogl, G, Betzi, S, McEwen, A, Kostmann, C, Trave, G.
Deposit date:2022-07-13
Release date:2023-08-16
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:SYNJ2BP PDZ domain in complex with a synthetic Vangl2 peptide.
To Be Published
8VBJ
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BU of 8vbj by Molmil
Structure of bovine anti-HIV Fab ElsE2
Descriptor: Bovine Fab ElsE2 heavy chain, Bovine Fab ElsE2 light chain, POTASSIUM ION, ...
Authors:Stanfield, R.L, Wilson, I.A.
Deposit date:2023-12-12
Release date:2024-09-04
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Immunization of cows with HIV envelope trimers generates broadly neutralizing antibodies to the V2-apex from the ultralong CDRH3 repertoire.
Plos Pathog., 20, 2024
8GBV
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BU of 8gbv by Molmil
Crystal structure of PC39-17A, an anti-HIV broadly neutralizing antibody
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, PC39-17A Fab heavy chain, ...
Authors:Murrell, S, Omorodion, O, Wilson, I.A.
Deposit date:2023-02-28
Release date:2023-06-07
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies.
Plos Pathog., 19, 2023
8AH9
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BU of 8ah9 by Molmil
De novo retro-aldolase RAbetaB-16.1
Descriptor: BENZOIC ACID, RAbetaB-16.1
Authors:Mittl, P, Oualb Chaib, A, Hilvert, D.
Deposit date:2022-07-21
Release date:2023-08-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Design and optimization of enzymatic activity in a de novo beta-barrel scaffold.
Protein Sci., 31, 2022
8QZN
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BU of 8qzn by Molmil
DARPin-Armadillo fusion protein with a selected Tyrosin pocket binding to the fused target peptide
Descriptor: 1,2-ETHANEDIOL, DARPin-Armadillo fusion protein with Tyrosin pocket and linked target peptide, SULFATE ION
Authors:Stark, Y, Menard, F, Jeliazkov, J, Ernst, P, Chembath, A, Ashraf, M, Hine, A, Plueckthun, A.
Deposit date:2023-10-27
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Modular binder technology by NGS-aided, high-resolution selection in yeast of designed armadillo modules.
Proc.Natl.Acad.Sci.USA, 121, 2024
5MAP
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BU of 5map by Molmil
X-ray generated oxyferrous complex of DtpA from Streptomyces lividans
Descriptor: DtpA, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Moreno Chicano, T, Chaplin, A.K, Worrall, J.A.R, Strange, R.W, Hough, M.A.
Deposit date:2016-11-04
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Photoreduction and validation of haem-ligand intermediate states in protein crystals by in situ single-crystal spectroscopy and diffraction.
IUCrJ, 4, 2017
6OYU
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BU of 6oyu by Molmil
Structure of an ancestral-reconstructed cytochrome P450 1B1 with alpha-naphthoflavone
Descriptor: 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE, Cytochrome P450 1B1, GLYCEROL, ...
Authors:Bart, A.G, Harris, K.L, Scott, E.E.
Deposit date:2019-05-15
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of an ancestral mammalian family 1B1 cytochrome P450 with increased thermostability.
J.Biol.Chem., 295, 2020
6XI5
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BU of 6xi5 by Molmil
Crystal structure of human N-acetylserotonin O-methyltransferase-like protein soaked with PDHPTAO
Descriptor: Probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, SULFATE ION
Authors:Stogios, P.J, Evdokimova, E, Yakunin, A, Savchenko, A.
Deposit date:2020-06-19
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of human N-acetylserotonin O-methyltransferase-like protein soaked with PDHPTAO
To Be Published
7YCA
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BU of 7yca by Molmil
Cryo-EM structure of the PSI-LHCI-Lhcp supercomplex from Ostreococcus tauri
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (1~{S})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaenyl]cyclohex-3-en-1-ol, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Shan, J, Sheng, X, Ishii, A, Watanabe, A, Song, C, Murata, K, Minagawa, J, Liu, Z.
Deposit date:2022-07-01
Release date:2023-04-26
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:The photosystem I supercomplex from a primordial green alga Ostreococcus tauri harbors three light-harvesting complex trimers.
Elife, 12, 2023
8VBO
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BU of 8vbo by Molmil
Structure of bovine anti-HIV Fab ElsE9
Descriptor: Bovine Fab ElsE9 heavy chain, Bovine Fab ElsE9 light chain, GLYCEROL, ...
Authors:Stanfield, R.L, Wilson, I.A.
Deposit date:2023-12-12
Release date:2024-09-04
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Immunization of cows with HIV envelope trimers generates broadly neutralizing antibodies to the V2-apex from the ultralong CDRH3 repertoire.
Plos Pathog., 20, 2024
6XI4
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BU of 6xi4 by Molmil
Crystal structure of Maf domain of human N-acetylserotonin O-methyltransferase-like protein soaked with TFBQ
Descriptor: CHLORIDE ION, Probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, SULFATE ION
Authors:Stogios, P.J, Evdokimova, E, Yakunin, A, Savchenko, A.
Deposit date:2020-06-19
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of Maf domain of human N-acetylserotonin O-methyltransferase-like protein soaked with TFBQ
To Be Published
8VBQ
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BU of 8vbq by Molmil
Structure of bovine anti-HIV Fab Bess7
Descriptor: Bovine Fab Bess7 heavy chain, Bovine Fab Bess7 light chain
Authors:Stanfield, R.L, Wilson, I.A.
Deposit date:2023-12-12
Release date:2024-09-04
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Immunization of cows with HIV envelope trimers generates broadly neutralizing antibodies to the V2-apex from the ultralong CDRH3 repertoire.
Plos Pathog., 20, 2024
6OZX
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BU of 6ozx by Molmil
Wild type GapR crystal structure 1 from C. crescentus
Descriptor: UPF0335 protein CC_3319
Authors:Tarry, M, Harmel, C, Taylor, J.A, Marczynski, G.T, Schmeing, T.M.
Deposit date:2019-05-16
Release date:2019-11-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structures of GapR reveal a central channel which could accommodate B-DNA.
Sci Rep, 9, 2019
6XLE
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BU of 6xle by Molmil
Full-length Hsc82 in complex with two Aha1 CTD in the presence of AMP-PNP
Descriptor: ATP-dependent molecular chaperone HSC82, Hsp90 co-chaperone AHA1, MAGNESIUM ION, ...
Authors:Liu, Y.X, Sun, M, Myasnikov, A.G, Elnatan, D, Agard, D.A.
Deposit date:2020-06-28
Release date:2021-06-30
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Cryo-EM structures reveal a multistep mechanism of Hsp90 activation by co-chaperone Aha1
To Be Published
7MF4
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BU of 7mf4 by Molmil
Crystal structure of Trypanosoma cruzi cytosolic Malic Enzyme
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CITRIC ACID, Malic enzyme
Authors:Ranzani, A.T, Cordeiro, A.T.
Deposit date:2021-04-08
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Trypanosoma cruzi Malic Enzyme Is the Target for Sulfonamide Hits from the GSK Chagas Box.
Acs Infect Dis., 7, 2021
5MDK
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BU of 5mdk by Molmil
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form (oxidized state - state 3)
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2016-11-11
Release date:2018-02-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6XLF
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BU of 6xlf by Molmil
Full-length Hsc82 in complex with Aha1 in the presence of AMP-PNP
Descriptor: ATP-dependent molecular chaperone HSC82, Hsp90 co-chaperone AHA1, MAGNESIUM ION, ...
Authors:Liu, Y.X, Sun, M, Myasnikov, A.G, Elnatan, D, Agard, D.A.
Deposit date:2020-06-28
Release date:2021-06-30
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Cryo-EM structures reveal a multistep mechanism of Hsp90 activation by co-chaperone Aha1
To Be Published
6XLG
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BU of 6xlg by Molmil
Full-length Hsc82 in complex with two Aha1 CTD in the presence of ATPgammaS
Descriptor: ATP-dependent molecular chaperone HSC82, Hsp90 co-chaperone AHA1, MAGNESIUM ION, ...
Authors:Liu, Y.X, Sun, M, Myasnikov, A.G, Elnatan, D, Agard, D.A.
Deposit date:2020-06-28
Release date:2021-06-30
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Cryo-EM structures reveal a multistep mechanism of Hsp90 activation by co-chaperone Aha1
To Be Published

225946

数据于2024-10-09公开中

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