Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 results

1E05
DownloadVisualize
BU of 1e05 by Molmil
PLASMA ALPHA ANTITHROMBIN-III
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ANTITHROMBIN-III, ...
Authors:McCoy, A.J, Skinner, R, Abrahams, J.-P, Pei, X.Y, Carrell, R.W.
Deposit date:2000-03-09
Release date:2000-06-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure of Beta-Antithrombin and the Effect of Glycosylation on Antithrombin'S Heparin Affinity and Activity.
J.Mol.Biol., 326, 2003
3OUD
DownloadVisualize
BU of 3oud by Molmil
MDR769 HIV-1 protease complexed with CA/p2 hepta-peptide
Descriptor: CA/p2 substrate peptide, MDR HIV-1 protease
Authors:Liu, Z, Wang, Y, Brunzelle, J, Kovari, I.A, Kovari, L.C.
Deposit date:2010-09-14
Release date:2011-03-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nine Crystal Structures Determine the Substrate Envelope of the MDR HIV-1 Protease.
Protein J., 30, 2011
5JD6
DownloadVisualize
BU of 5jd6 by Molmil
Crystal structure of MGS-MChE2, an alpha/beta hydrolase enzyme from the metagenome of sediments from the lagoon of Mar Chica, Morocco
Descriptor: MGS-MChE2
Authors:Stogios, P.J, Xu, X, Nocek, B, Yim, V, Cui, H, Martinez-Martinez, M, Golyshin, P.N, Yakima, M.M, Ferrer, M, Savchenko, A.
Deposit date:2016-04-15
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.463 Å)
Cite:Crystal structure of MGS-MChE2, an alpha/beta hydrolase enzyme from the metagenome of sediments from the lagoon of Mar Chica, Morocco
To Be Published
4YBA
DownloadVisualize
BU of 4yba by Molmil
The structure of the C.Kpn2I controller protein
Descriptor: GLYCEROL, Regulatory protein C
Authors:Shevtsov, M.B, Martin, R.N, Swiderska, A, McGeehan, G.E, Kneale, G.G.
Deposit date:2015-02-18
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of the C.kpn2I controller protein
To Be Published
7PQ8
DownloadVisualize
BU of 7pq8 by Molmil
Crystal structure of Campylobacter jejuni DsbA1
Descriptor: TETRAETHYLENE GLYCOL, Thiol:disulfide interchange protein DsbA
Authors:Orlikowska, M, Bocian-Ostrzycka, K.M, Banas, A.M, Jagusztyn-Krynicka, E.K.
Deposit date:2021-09-16
Release date:2021-12-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.329 Å)
Cite:Interplay between DsbA1, DsbA2 and C8J_1298 Periplasmic Oxidoreductases of Campylobacter jejuni and Their Impact on Bacterial Physiology and Pathogenesis.
Int J Mol Sci, 22, 2021
6ZO4
DownloadVisualize
BU of 6zo4 by Molmil
The pointed end complex of dynactin bound to BICD2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ARP1 actin related protein 1 homolog A, ...
Authors:Lau, C.K, Lacey, S.E, Carter, A.P.
Deposit date:2020-07-07
Release date:2020-07-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Cryo-EM reveals the complex architecture of dynactin's shoulder region and pointed end.
Embo J., 40, 2021
5JG7
DownloadVisualize
BU of 5jg7 by Molmil
Crystal structure of putative periplasmic binding protein from Salmonella typhimurium LT2
Descriptor: Fur regulated Salmonella iron transporter, GLYCEROL
Authors:Chang, C, Zhou, M, Shatsman, S, Joachimiak, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-04-19
Release date:2016-04-27
Last modified:2016-07-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of putative periplasmic binding protein from Salmonella typhimurium LT2
To Be Published
5JBR
DownloadVisualize
BU of 5jbr by Molmil
Crystal structure of uncharacterized protein Bcav_2135 from Beutenbergia cavernae
Descriptor: SULFATE ION, Uncharacterized protein Bcav_2135
Authors:Chang, C, Cuff, M, Hatzos-Skintges, C, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2016-04-13
Release date:2016-04-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of uncharacterized protein Bcav_2135 from Beutenbergia cavernae
To Be Published
7PXC
DownloadVisualize
BU of 7pxc by Molmil
Substrate-engaged mycobacterial Proteasome-associated ATPase in complex with open-gate 20S CP - composite map (state A)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Jomaa, A, Kavalchuk, M, Weber-Ban, E.
Deposit date:2021-10-08
Release date:2022-01-19
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Structural basis of prokaryotic ubiquitin-like protein engagement and translocation by the mycobacterial Mpa-proteasome complex.
Nat Commun, 13, 2022
8PDG
DownloadVisualize
BU of 8pdg by Molmil
The phosphatase and C2 domains of SHIP1 with covalent Z2738285202
Descriptor: DIMETHYL SULFOXIDE, Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1, ~{N}-(8-chloranylquinolin-2-yl)propanamide
Authors:Bradshaw, W.J, Moreira, T, Scacioc, A, Bountra, C, Chalk, R, von Delft, F, Brennan, P.E, Gileadi, O.
Deposit date:2023-06-12
Release date:2023-06-28
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
Structure, 32, 2024
6XC7
DownloadVisualize
BU of 6xc7 by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies CC12.3 and CR3022
Descriptor: CC12.3 heavy chain, CC12.3 light chain, CR3022 heavy chain, ...
Authors:Yuan, M, Liu, H, Wu, N.C, Zhu, X, Wilson, I.A.
Deposit date:2020-06-08
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.883 Å)
Cite:Structural basis of a shared antibody response to SARS-CoV-2.
Science, 369, 2020
6XGV
DownloadVisualize
BU of 6xgv by Molmil
Crystal Structure of KRAS-G13D (GMPPNP-bound) in complex with RAS-binding domain (RBD) and cysteine-rich domain (CRD) of RAF1/CRAF
Descriptor: CHLORIDE ION, GLYCEROL, GTPase KRas, ...
Authors:Tran, T.H, Chan, A.H, Dharmaiah, S, Simanshu, D.K.
Deposit date:2020-06-18
Release date:2021-01-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:KRAS interaction with RAF1 RAS-binding domain and cysteine-rich domain provides insights into RAS-mediated RAF activation.
Nat Commun, 12, 2021
6ZQJ
DownloadVisualize
BU of 6zqj by Molmil
Cryo-EM structure of trimeric prME spike of Spondweni virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein, prM
Authors:Renner, M, Dejnirattisai, W, Carrique, L, Serna Martin, I, Karia, D, Ilca, S.L, Ho, S.F, Kotecha, A, Keown, J.R, Mongkolsapaya, J, Screaton, G.R, Grimes, J.M.
Deposit date:2020-07-09
Release date:2021-01-20
Last modified:2021-08-04
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Flavivirus maturation leads to the formation of an occupied lipid pocket in the surface glycoproteins.
Nat Commun, 12, 2021
1E04
DownloadVisualize
BU of 1e04 by Molmil
PLASMA BETA ANTITHROMBIN-III
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ANTITHROMBIN-III, GLYCEROL, ...
Authors:Mccoy, A.J, Skinner, R, Abrahams, J.-P, Pei, X.Y, Carrell, R.W.
Deposit date:2000-03-09
Release date:2000-06-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Beta-Antithrombin and the Effect of Glycosylation on Antithrombin'S Heparin Affinity and Activity.
J.Mol.Biol., 326, 2003
6ZNN
DownloadVisualize
BU of 6znn by Molmil
The pointed end complex of dynactin bound to Hook3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ARP1 actin related protein 1 homolog A, ...
Authors:Lau, C.K, Lacey, S.E, Carter, A.P.
Deposit date:2020-07-06
Release date:2020-07-29
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM reveals the complex architecture of dynactin's shoulder region and pointed end.
Embo J., 40, 2021
6SRT
DownloadVisualize
BU of 6srt by Molmil
Endolysine N-acetylmuramoyl-L-alanine amidase LysCS from Clostridium intestinale URNW
Descriptor: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.-K, Kaczorowski, T.
Deposit date:2019-09-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Structure and function of endolysines LysCS, LysC from Clostridium intestinale
To Be Published
1DZC
DownloadVisualize
BU of 1dzc by Molmil
High resolution structure of acidic fibroblast growth factor. Mutant FGF-4-ALA-(24-154), 24 NMR structures
Descriptor: FIBROBLAST GROWTH FACTOR 1
Authors:Lozano, R.M, Pineda-Lucena, A, Gonzalez, C, Jimenez, M.A, Cuevas, P, Redondo-Horcajo, M, Sanz, J.M, Rico, M, Gimenez-Gallego, G.
Deposit date:2000-02-24
Release date:2000-03-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1H-NMR Structural Characterization of a Non Mitogenic, Vasodilatory, Ischemia-Protector and Neuromodulatory Acidic Fibroblast Growth Factor
Biochemistry, 39, 2000
6XD3
DownloadVisualize
BU of 6xd3 by Molmil
Structure of the human CAK in complex with THZ1
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Greber, B.J, Perez-Bertoldi, J.M, Lim, K, Iavarone, A.T, Toso, D.B, Nogales, E.
Deposit date:2020-06-09
Release date:2020-09-09
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The cryoelectron microscopy structure of the human CDK-activating kinase.
Proc.Natl.Acad.Sci.USA, 117, 2020
7Q21
DownloadVisualize
BU of 7q21 by Molmil
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
Descriptor: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P.
Deposit date:2021-10-22
Release date:2022-02-02
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The respiratory supercomplex from C. glutamicum.
Structure, 30, 2022
8FNI
DownloadVisualize
BU of 8fni by Molmil
Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing
Descriptor: RNA-editing substrate-binding complex protein 10 (RESC10), RNA-editing substrate-binding complex protein 11 (RESC11), RNA-editing substrate-binding complex protein 13 (RESC13), ...
Authors:Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H.
Deposit date:2022-12-27
Release date:2023-07-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing.
Science, 381, 2023
8PKP
DownloadVisualize
BU of 8pkp by Molmil
Cryo-EM structure of the apo Anaphase-promoting complex/cyclosome (APC/C) at 3.2 Angstrom resolution
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Hoefler, A, Yu, J, Chang, L, Zhang, Z, Yang, J, Boland, A, Barford, D.
Deposit date:2023-06-27
Release date:2023-07-19
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:High-resolution structure of the Anaphase-promoting complex (APC/C) bound to co-activator Cdh1
To Be Published
5JD8
DownloadVisualize
BU of 5jd8 by Molmil
Crystal structure of the serine endoprotease from Yersinia pestis
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, DI(HYDROXYETHYL)ETHER, Periplasmic serine peptidase DegS, ...
Authors:Filippova, E.V, Wawrzsak, Z, Sandoval, J, Skarina, T, Grimshaw, S, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-04-15
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the serine endoprotease from Yersinia pestis
To Be Published
6ZS8
DownloadVisualize
BU of 6zs8 by Molmil
X-ray structure of the adduct formed upon treating lysozyme with an aged solution of arsenoplatin-1
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Lysozyme, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2020-07-15
Release date:2020-12-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:The first step of arsenoplatin-1 aggregation in solution unveiled by solving the crystal structure of its protein adduct.
Dalton Trans, 50, 2021
4YF1
DownloadVisualize
BU of 4yf1 by Molmil
1.85 angstrom crystal structure of lmo0812 from Listeria monocytogenes EGD-e
Descriptor: CITRATE ANION, Lmo0812 protein, SODIUM ION
Authors:Krishna, S.N, Light, S.H, Filippova, E.V, Minasov, G, Kiryukhina, O, Jedrzejczak, R, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-02-24
Release date:2015-03-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:1.85 angstrom crystal structure of lmo0812 from Listeria monocytogenes EGD-e
To Be Published
7PX3
DownloadVisualize
BU of 7px3 by Molmil
Structure of U5 snRNP assembly and recycling factor TSSC4 in complex with BRR2 and Jab1 domain of PRPF8
Descriptor: Pre-mRNA-processing-splicing factor 8, Protein TSSC4, U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Bergfort, A, Kuropka, B, Ilik, I.A, Freund, C, Aktas, T, Hilal, T, Weber, G, Wahl, M.C.
Deposit date:2021-10-07
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling.
Nucleic Acids Res., 50, 2022

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon