Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1GIC
DownloadVisualize
BU of 1gic by Molmil
CONCANAVALIN A COMPLEXED WITH METHYL ALPHA-D-GLUCOPYRANOSIDE
Descriptor: CALCIUM ION, CONCANAVALIN A, MANGANESE (II) ION, ...
Authors:Bradbrook, G.M, Gleichmann, T, Harrop, S.J, Helliwell, J.R, Habash, J, Kalb(Gilboa), A.J, Tong, L, Wan, T.C.M, Yariv, J.
Deposit date:1996-08-08
Release date:1997-08-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure solution of a cubic crystal of concanavalin A complexed with methyl alpha-D-glucopyranoside.
Acta Crystallogr.,Sect.D, 52, 1996
4XYJ
DownloadVisualize
BU of 4xyj by Molmil
Crystal structure of human phosphofructokinase-1 in complex with ATP and Mg, Northeast Structural Genomics Consortium Target HR9275
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent 6-phosphofructokinase, platelet type, ...
Authors:Forouhar, F, Webb, B.A, Szu, F.-E, Seetharaman, J, Barber, D.L, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2015-02-02
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of human phosphofructokinase-1 and atomic basis of cancer-associated mutations.
Nature, 523, 2015
4XYK
DownloadVisualize
BU of 4xyk by Molmil
Crystal structure of human phosphofructokinase-1 in complex with ADP, Northeast Structural Genomics Consortium Target HR9275
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent 6-phosphofructokinase, platelet type, ...
Authors:Forouhar, F, Webb, B.A, Szu, F.-E, Seetharaman, J, Barber, D.L, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2015-02-02
Release date:2015-05-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structures of human phosphofructokinase-1 and atomic basis of cancer-associated mutations.
Nature, 523, 2015
7SN8
DownloadVisualize
BU of 7sn8 by Molmil
Cryo-EM structure of Drosophila Integrator cleavage module (IntS4-IntS9-IntS11) in complex with IP6
Descriptor: INOSITOL HEXAKISPHOSPHATE, Integrator complex subunit 11, Integrator complex subunit 4, ...
Authors:Lin, M, Tong, L.
Deposit date:2021-10-27
Release date:2022-10-12
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Inositol hexakisphosphate is required for Integrator function.
Nat Commun, 13, 2022
4RMM
DownloadVisualize
BU of 4rmm by Molmil
Crystal Structure of the Q7NVP2_CHRVO protein from Chromobacterium violaceum. Northeast Structural Genomics Consortium Target CvR191
Descriptor: Putative uncharacterized protein
Authors:Vorobiev, S, Su, M, Seetharaman, J, Mao, L, Xiao, R, Ciccosanti, C, Foote, E.L, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-10-21
Release date:2014-11-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Q7NVP2_CHRVO protein from Chromobacterium violaceum.
To be Published
7UG9
DownloadVisualize
BU of 7ug9 by Molmil
Crystal structure of RNase AM PHP domain
Descriptor: 5'-3' exoribonuclease, MANGANESE (II) ION, SULFATE ION
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2022-03-24
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Identification of a novel deFADding activity in human, yeast and bacterial 5' to 3' exoribonucleases.
Nucleic Acids Res., 50, 2022
4RL6
DownloadVisualize
BU of 4rl6 by Molmil
Crystal Structure of the Q04L03_STRP2 protein from Streptococcus pneumoniae. Northeast Structural Genomics Consortium Target SpR105
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Saccharopine dehydrogenase
Authors:Vorobiev, S, Neely, H.M, Odukwe, C.D, Seetharaman, J, Mao, L, Xiao, R, Kohan, E, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2014-10-15
Release date:2014-11-05
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal Structure of the Q04L03_STRP2 protein from Streptococcus pneumoniae.
To be Published
5DTJ
DownloadVisualize
BU of 5dtj by Molmil
Crystal Structure of dfp-inhibited mouse acetylcholinesterase in complex with the reactivator SP-134
Descriptor: 1-[5-(2,4-dichlorophenoxy)pentyl]-1H-imidazole, Acetylcholinesterase
Authors:Tran, T.H, Tong, L.
Deposit date:2015-09-18
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Discovery of New Classes of Compounds that Reactivate Acetylcholinesterase Inhibited by Organophosphates.
Chembiochem, 16, 2015
5DTI
DownloadVisualize
BU of 5dti by Molmil
Crystal structure of mouse acetylcholinesterase
Descriptor: Acetylcholinesterase
Authors:Tran, T.H, Tong, L.
Deposit date:2015-09-18
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Discovery of New Classes of Compounds that Reactivate Acetylcholinesterase Inhibited by Organophosphates.
Chembiochem, 16, 2015
4QOZ
DownloadVisualize
BU of 4qoz by Molmil
Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex
Descriptor: 3'-5' exoribonuclease 1, Histone RNA hairpin-binding protein, histone mRNA stem-loop
Authors:Tan, D, Tong, L.
Deposit date:2014-06-21
Release date:2014-07-23
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4QSK
DownloadVisualize
BU of 4qsk by Molmil
Crystal Structure of L. monocytogenes Pyruvate Carboxylase in complex with Cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CITRATE ANION, MANGANESE (II) ION, ...
Authors:Choi, P.H, Tong, L.
Deposit date:2014-07-04
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Cyclic Dinucleotide c-di-AMP Is an Allosteric Regulator of Metabolic Enzyme Function.
Cell(Cambridge,Mass.), 158, 2014
4QSH
DownloadVisualize
BU of 4qsh by Molmil
Crystal Structure of L. monocytogenes Pyruvate Carboxylase in complex with Cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CITRATE ANION, MANGANESE (II) ION, ...
Authors:Choi, P.H, Tong, L.
Deposit date:2014-07-04
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:The Cyclic Dinucleotide c-di-AMP Is an Allosteric Regulator of Metabolic Enzyme Function.
Cell(Cambridge,Mass.), 158, 2014
4S1C
DownloadVisualize
BU of 4s1c by Molmil
Crystal Structure of L. monocytogenes phosphodiesterase PgpH HD domain
Descriptor: FE (III) ION, Lmo1466 protein
Authors:Luo, S, Tong, L.
Deposit date:2015-01-12
Release date:2015-02-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence.
Proc.Natl.Acad.Sci.USA, 112, 2015
4RWW
DownloadVisualize
BU of 4rww by Molmil
Crystal Structure of L. monocytogenes PstA in complex with cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Lmo2692 protein
Authors:Choi, P.H, Tong, L.
Deposit date:2014-12-07
Release date:2014-12-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis for the recognition of cyclic-di-AMP by PstA, a PII -like signal transduction protein.
Microbiologyopen, 4, 2015
4RWX
DownloadVisualize
BU of 4rwx by Molmil
Crystal Structure of L. monocytogenes PstA
Descriptor: Lmo2692 protein
Authors:Choi, P.H, Tong, L.
Deposit date:2014-12-07
Release date:2014-12-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular basis for the recognition of cyclic-di-AMP by PstA, a PII -like signal transduction protein.
Microbiologyopen, 4, 2015
4S1B
DownloadVisualize
BU of 4s1b by Molmil
Crystal Structure of L. monocytogenes phosphodiesterase PgpH HD domain in complex with Cyclic-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, FE (III) ION, Lmo1466 protein
Authors:Luo, S, Tong, L.
Deposit date:2015-01-12
Release date:2015-02-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence.
Proc.Natl.Acad.Sci.USA, 112, 2015
6UN9
DownloadVisualize
BU of 6un9 by Molmil
Crystal Structure of the Q7VLF5_HAEDU protein from Haemophilus ducreyi. Northeast Structural Genomics Consortium Target Hdr25
Descriptor: Uncharacterized protein
Authors:Vorobiev, S.M, Seetharaman, J, Kolev, M, Xiao, R, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2019-10-11
Release date:2020-12-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Q7VLF5_HAEDU protein from Haemophilus ducreyi. Northeast Structural Genomics Consortium Target Hdr25
To Be Published
6URG
DownloadVisualize
BU of 6urg by Molmil
Cryo-EM structure of human CPSF160-WDR33-CPSF30-CPSF100 PIM complex
Descriptor: Cleavage and polyadenylation specificity factor subunit 1, Cleavage and polyadenylation specificity factor subunit 2, Cleavage and polyadenylation specificity factor subunit 4, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-10-23
Release date:2019-11-27
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural Insights into the Human Pre-mRNA 3'-End Processing Machinery.
Mol.Cell, 77, 2020
5HCU
DownloadVisualize
BU of 5hcu by Molmil
Crystal structure of mouse acetylchoinesterase inhibited by DFP
Descriptor: Acetylcholinesterase
Authors:Tran, T.H, Tong, L.
Deposit date:2016-01-04
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4151 Å)
Cite:Discovery of New Classes of Compounds that Reactivate Acetylcholinesterase Inhibited by Organophosphates.
Chembiochem, 16, 2015
6URO
DownloadVisualize
BU of 6uro by Molmil
Cryo-EM structure of human CPSF160-WDR33-CPSF30-PAS RNA-CstF77 complex
Descriptor: Cleavage and polyadenylation specificity factor subunit 1, Cleavage and polyadenylation specificity factor subunit 4, Cleavage stimulation factor subunit 3, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-10-23
Release date:2019-11-27
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Insights into the Human Pre-mRNA 3'-End Processing Machinery.
Mol.Cell, 77, 2020
6V4X
DownloadVisualize
BU of 6v4x by Molmil
Cryo-EM structure of an active human histone pre-mRNA 3'-end processing machinery at 3.2 Angstrom resolution
Descriptor: Cleavage and polyadenylation specificity factor subunit 2, Cleavage and polyadenylation specificity factor subunit 3, Small nuclear ribonucleoprotein E, ...
Authors:Sun, Y, Zhang, Y, Walz, T, Tong, L.
Deposit date:2019-12-02
Release date:2020-02-19
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of an active human histone pre-mRNA 3'-end processing machinery.
Science, 367, 2020
6WUG
DownloadVisualize
BU of 6wug by Molmil
Crystal Structure of S. pombe Rai1 in complex with 3'-FADP
Descriptor: 1,2-ETHANEDIOL, Decapping nuclease din1, MAGNESIUM ION, ...
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUK
DownloadVisualize
BU of 6wuk by Molmil
Crystal structure of mouse DXO in complex with CoA
Descriptor: COENZYME A, Decapping and exoribonuclease protein
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUI
DownloadVisualize
BU of 6wui by Molmil
Crystal Structure of mutant S. pombe Rai1 (E150S/E199Q/E239Q) in complex with 3'-FADP
Descriptor: Decapping nuclease din1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUF
DownloadVisualize
BU of 6wuf by Molmil
Crystal structure of mouse DXO in complex with 3'-FADP
Descriptor: 1,2-ETHANEDIOL, Decapping and exoribonuclease protein, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon