Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5Y41
DownloadVisualize
BU of 5y41 by Molmil
Crystal Structure of LIGAND-BOUND NURR1-LBD
Descriptor: (13E,15S)-15-hydroxy-9-oxoprosta-10,13-dien-1-oic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Sreekanth, R, Lescar, J, Yoon, H.S.
Deposit date:2017-07-31
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:PGE1 and PGA1 bind to Nurr1 and activate its transcriptional function.
Nat.Chem.Biol., 2020
4JLK
DownloadVisualize
BU of 4jlk by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the F2.2.1 inhibitoR (2-[({2-[3-(2-FLUOROETHOXY)-4-METHOXYPHENYL]-5-METHYL-1,3-THIAZOL-4-YL}METHYL)SULFANYL]PYRIMIDINE-4,6-DIAMINE)
Descriptor: 2-[({2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-methyl-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine-4,6-diamine, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Nomme, J, Lavie, A.
Deposit date:2013-03-12
Release date:2013-09-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Development of new deoxycytidine kinase inhibitors and noninvasive in vivo evaluation using positron emission tomography.
J.Med.Chem., 56, 2013
4L5B
DownloadVisualize
BU of 4l5b by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the DI-43 inhibitor
Descriptor: 1-[5-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]-2-methylpropan-2-ol, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Nomme, J, Lavie, A.
Deposit date:2013-06-10
Release date:2013-09-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Development of new deoxycytidine kinase inhibitors and noninvasive in vivo evaluation using positron emission tomography.
J.Med.Chem., 56, 2013
8G92
DownloadVisualize
BU of 8g92 by Molmil
Structure of inhibitor 16d-bound SPNS2
Descriptor: 3-[3-(4-decylphenyl)-1,2,4-oxadiazol-5-yl]propan-1-amine, Sphingosine-1-phosphate transporter SPNS2
Authors:Chen, H, Li, X.
Deposit date:2023-02-21
Release date:2023-05-24
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
7Y1T
DownloadVisualize
BU of 7y1t by Molmil
Complex of integrin alphaV/beta8 and L-TGF-beta1 at a ratio of 1:2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Duan, Z, Zhang, Z.
Deposit date:2022-06-08
Release date:2022-08-31
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Specificity of TGF-beta 1 signal designated by LRRC33 and integrin alpha V beta 8.
Nat Commun, 13, 2022
7Y1R
DownloadVisualize
BU of 7y1r by Molmil
Human L-TGF-beta1 in complex with the anchor protein LRRC33
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Duan, Z, Zhang, Z.
Deposit date:2022-06-08
Release date:2022-08-31
Last modified:2022-09-07
Method:ELECTRON MICROSCOPY (4.01 Å)
Cite:Specificity of TGF-beta 1 signal designated by LRRC33 and integrin alpha V beta 8.
Nat Commun, 13, 2022
8HII
DownloadVisualize
BU of 8hii by Molmil
The BRIL-SLC19A1/Fab/Nb ternary complex
Descriptor: BRIL-SLC19A1 chimera, anti-BRIL Fab heavy chain, anti-BRIL Fab light chain, ...
Authors:Zhang, Z, Dang, Y.
Deposit date:2022-11-20
Release date:2022-12-21
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Molecular mechanism of substrate recognition by folate transporter SLC19A1.
Cell Discov, 8, 2022
8HIK
DownloadVisualize
BU of 8hik by Molmil
The TPP-bound BRIL-SLC19A1/Fab/Nb ternary complex
Descriptor: Anti-BRIL Fab heavy chain, Anti-BRIL Fab light chain, Anti-Fab nanobody, ...
Authors:Zhang, Z, Dang, Y.
Deposit date:2022-11-20
Release date:2022-12-21
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Molecular mechanism of substrate recognition by folate transporter SLC19A1.
Cell Discov, 8, 2022
8HIJ
DownloadVisualize
BU of 8hij by Molmil
The 5-MTHF-bound BRIL-SLC19A1/Fab/Nb ternary complex
Descriptor: Anti-BRIL Fab heavy chain, Anti-BRIL Fab light chain, Anti-Fab nanobody, ...
Authors:Zhang, Z, Dang, Y.
Deposit date:2022-11-20
Release date:2022-12-21
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Molecular mechanism of substrate recognition by folate transporter SLC19A1.
Cell Discov, 8, 2022
6IM5
DownloadVisualize
BU of 6im5 by Molmil
YAP-binding domain of human TEAD1
Descriptor: PHOSPHATE ION, Transcriptional enhancer factor TEF-1
Authors:Mo, Y, Lee, H.S, Kim, S.J, Ku, B.
Deposit date:2018-10-22
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Crystal Structure of the YAP-binding Domain of Human TEAD1
Bull.Korean Chem.Soc., 40, 2019
5ICT
DownloadVisualize
BU of 5ict by Molmil
Crystal structure of the Drosophila GluR1A ligand binding domain Y792T mutant complex with glutamate
Descriptor: GLUTAMIC ACID, GLYCEROL, Glutamate receptor 1
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2016-02-23
Release date:2016-12-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
7CM5
DownloadVisualize
BU of 7cm5 by Molmil
Full-length Sarm1 in a self-inhibited state
Descriptor: NAD(+) hydrolase SARM1
Authors:Zhang, Z, Jiang, Y.
Deposit date:2020-07-24
Release date:2020-10-21
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:The NAD + -mediated self-inhibition mechanism of pro-neurodegenerative SARM1.
Nature, 588, 2020
7CM7
DownloadVisualize
BU of 7cm7 by Molmil
NAD+-bound Sarm1 E642A in the self-inhibited state
Descriptor: NAD(+) hydrolase SARM1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zhang, Z, Jiang, Y.
Deposit date:2020-07-25
Release date:2020-10-21
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:The NAD + -mediated self-inhibition mechanism of pro-neurodegenerative SARM1.
Nature, 588, 2020
7CM6
DownloadVisualize
BU of 7cm6 by Molmil
NAD+-bound Sarm1 in the self-inhibited state
Descriptor: NAD(+) hydrolase SARM1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zhang, Z, Jiang, Y.
Deposit date:2020-07-25
Release date:2020-10-21
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The NAD + -mediated self-inhibition mechanism of pro-neurodegenerative SARM1.
Nature, 588, 2020
5UN1
DownloadVisualize
BU of 5un1 by Molmil
Crystal structure of GluN1/GluN2B delta-ATD NMDA receptor
Descriptor: (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Song, X, Gouaux, E.
Deposit date:2017-01-30
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Mechanism of NMDA receptor channel block by MK-801 and memantine.
Nature, 556, 2018
4NFX
DownloadVisualize
BU of 4nfx by Molmil
Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Descriptor: Putative Nudix hydrolase ymfB
Authors:Hong, M.K, Kim, J.K, Kang, L.W.
Deposit date:2013-11-01
Release date:2014-05-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Acta Crystallogr.,Sect.D, 70, 2014
4NFW
DownloadVisualize
BU of 4nfw by Molmil
Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Descriptor: MANGANESE (II) ION, Putative Nudix hydrolase ymfB, SULFATE ION
Authors:Hong, M.K, Kim, J.K, Kang, L.W.
Deposit date:2013-11-01
Release date:2014-05-14
Last modified:2015-03-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Divalent metal ion-based catalytic mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Acta Crystallogr.,Sect.D, 70, 2014
5DT6
DownloadVisualize
BU of 5dt6 by Molmil
Crystal structure of the Drosophila GluR1A ligand binding domain complex with glutamate
Descriptor: GLUTAMIC ACID, GLYCEROL, Glutamate receptor 1
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2015-09-17
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
5DTB
DownloadVisualize
BU of 5dtb by Molmil
Crystal structure of the Drosophila CG3822 KaiR1D ligand binding domain complex with glutamate
Descriptor: CG3822, GLUTAMIC ACID, GLYCEROL, ...
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2015-09-17
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.843 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
5EHM
DownloadVisualize
BU of 5ehm by Molmil
Crystal structure of the Drosophila CG3822 KaiR1D ligand binding domain complex with NMDA
Descriptor: N-methyl-D-aspartic acid, RE06730p,CG3822
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2015-10-28
Release date:2016-11-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.281 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
5EHS
DownloadVisualize
BU of 5ehs by Molmil
Crystal structure of the Drosophila CG3822 KaiR1D ligand binding domain complex with D-AP5
Descriptor: 5-phosphono-D-norvaline, 5-phosphono-L-norvaline, RE06730p,GH17276
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2015-10-28
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.749 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
2UZ0
DownloadVisualize
BU of 2uz0 by Molmil
The Crystal crystal structure of the estA protein, a virulence factor estA protein from Streptococcus pneumonia
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Kim, M.H, Kang, B.S, Kim, K.J, Oh, T.K.
Deposit date:2007-04-23
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of the Esta Protein, a Virulence Factor from Streptococcus Pneumoniae.
Proteins, 70, 2008
7KHR
DownloadVisualize
BU of 7khr by Molmil
Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (5R)-2,4-dideoxy-1-C-{(2S,3R,4S)-3-hydroxy-4-[(2R,3S,4E,6E,9R,10S,11R,12E,14Z)-10-hydroxy-3,15-dimethoxy-7,9,11,13-tetramethyl-16-oxo-1-oxacyclohexadeca-4,6,12,14-tetraen-2-yl]pentan-2-yl}-4-methyl-5-propan-2-yl-alpha-D-threo-pentopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wang, R, Li, X.
Deposit date:2020-10-21
Release date:2021-03-17
Last modified:2021-09-29
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Molecular basis of V-ATPase inhibition by bafilomycin A1.
Nat Commun, 12, 2021
2I6B
DownloadVisualize
BU of 2i6b by Molmil
Human Adenosine Kinase in Complex with An Acetylinic Inhibitor
Descriptor: 5-[4-(DIMETHYLAMINO)PHENYL]-6-[(6-MORPHOLIN-4-YLPYRIDIN-3-YL)ETHYNYL]PYRIMIDIN-4-AMINE, Adenosine kinase
Authors:Muchmore, S.W.
Deposit date:2006-08-28
Release date:2007-01-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of human adenosine kinase inhibitor complexes reveal two distinct binding modes.
J.Med.Chem., 49, 2006
2I6A
DownloadVisualize
BU of 2i6a by Molmil
Human Adenosine Kinase in Complex With 5'-Deoxy-5-Iodotubercidin
Descriptor: 7-(5-DEOXY-BETA-D-RIBOFURANOSYL)-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE, Adenosine kinase
Authors:Muchmore, S.W.
Deposit date:2006-08-28
Release date:2007-01-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of human adenosine kinase inhibitor complexes reveal two distinct binding modes.
J.Med.Chem., 49, 2006

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon