Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1VCC
DownloadVisualize
BU of 1vcc by Molmil
AMINO TERMINAL 9KDA DOMAIN OF VACCINIA VIRUS DNA TOPOISOMERASE I RESIDUES 1-77, EXPERIMENTAL ELECTRON DENSITY FOR RESIDUES 1-77
Descriptor: DNA TOPOISOMERASE I
Authors:Sharma, A, Hanai, R, Mondragon, A.
Deposit date:1995-10-02
Release date:1996-03-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the amino-terminal fragment of vaccinia virus DNA topoisomerase I at 1.6 A resolution.
Structure, 2, 1994
4CI5
DownloadVisualize
BU of 4ci5 by Molmil
Structural basis for GL479 a dual Peroxisome Proliferator-Activated Receptor gamma agonist
Descriptor: 2-methyl-2-[4-[2-[4-[(E)-phenyldiazenyl]phenoxy]ethyl]phenoxy]propanoic acid, PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
Authors:Santos, J.C, Bernardes, A, Polikarpov, I.
Deposit date:2013-12-05
Release date:2014-12-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor alpha / gamma.
J. Struct. Biol., 191, 2015
4CUR
DownloadVisualize
BU of 4cur by Molmil
Crystal structure of human BAZ2B in complex with fragment-3 N09555
Descriptor: 1,2-ETHANEDIOL, 2-(hydroxymethyl)-6-methylpyridin-3-ol, BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B
Authors:Bradley, A.R, Liu, Y, Krojer, T, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, von Delft, F.
Deposit date:2014-03-21
Release date:2014-04-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.842 Å)
Cite:Crystal Structure of Human Baz2B in Complex with Fragment-3 N09553
To be Published
6D37
DownloadVisualize
BU of 6d37 by Molmil
Trp-cage tr16b R16Nva : Elimination of pH Dependent Interactions
Descriptor: ALA-TYR-ALA-GLN-TRP-LEU-ALA-ASP-DAL-GLY-PRO-ALA-SER-DAL-NVA-PRO-PRO-PRO-SER
Authors:Byrne, A, Andersen, N.H.
Deposit date:2018-04-14
Release date:2019-03-13
Last modified:2019-12-04
Method:SOLUTION NMR
Cite:Reversing the typical pH stability profile of the Trp-cage.
Biopolymers, 110, 2019
6CXD
DownloadVisualize
BU of 6cxd by Molmil
Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution
Descriptor: Peptidase B, SULFATE ION
Authors:Woinska, M, Lipowska, J, Shabalin, I.G, Cymborowski, M, Grimshaw, S, Winsor, J, Shuvalova, L, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-02
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain.
Febs J., 287, 2020
2H19
DownloadVisualize
BU of 2h19 by Molmil
Crystal Structure of ResA Cys77Ala Variant
Descriptor: 1,2-ETHANEDIOL, Thiol-disulfide oxidoreductase resA
Authors:Lewin, A, Crow, A, Oubrie, A, Le Brun, N.E.
Deposit date:2006-05-16
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Basis for Specificity of the Extracytoplasmic Thioredoxin ResA.
J.Biol.Chem., 281, 2006
2H9L
DownloadVisualize
BU of 2h9l by Molmil
WDR5delta23
Descriptor: SULFATE ION, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
1JH1
DownloadVisualize
BU of 1jh1 by Molmil
Crystal Structure of MMP-8 complexed with a 6H-1,3,4-thiadiazine derived inhibitor
Descriptor: BUT-3-ENYL-[5-(4-CHLORO-PHENYL)-3,6-DIHYDRO-[1,3,4]THIADIAZIN-2-YLIDENE]-AMINE, CALCIUM ION, Matrix Metalloproteinase 8, ...
Authors:Schroder, J, Henke, A, Wenzel, H, Brandstetter, H, Stammler, H.G, Stammler, A, Pfeiffer, W.D, Tschesche, H.
Deposit date:2001-06-27
Release date:2001-12-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based design and synthesis of potent matrix metalloproteinase inhibitors derived from a 6H-1,3,4-thiadiazine scaffold.
J.Med.Chem., 44, 2001
3Q4U
DownloadVisualize
BU of 3q4u by Molmil
Crystal structure of the ACVR1 kinase domain in complex with LDN-193189
Descriptor: 1,2-ETHANEDIOL, 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline, Activin receptor type-1, ...
Authors:Chaikuad, A, Sanvitale, C, Cooper, C.D.O, Mahajan, P, Daga, N, Petrie, K, Alfano, I, Gileadi, O, Fedorov, O, Allerston, C.K, Krojer, T, Vollmar, M, von Delft, F, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A, Structural Genomics Consortium (SGC)
Deposit date:2010-12-24
Release date:2011-02-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A new class of small molecule inhibitor of BMP signaling.
Plos One, 8, 2013
3PHD
DownloadVisualize
BU of 3phd by Molmil
Crystal structure of human HDAC6 in complex with ubiquitin
Descriptor: Histone deacetylase 6, Polyubiquitin, ZINC ION
Authors:Dong, A, Qui, W, Ravichandran, M, Schuetz, A, Loppnau, P, Li, F, Mackenzie, F, Kozieradzki, I, Ouyang, H, Structural Genomics Consortium (SGC)
Deposit date:2010-11-03
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Protein Aggregates Are Recruited to Aggresome by Histone Deacetylase 6 via Unanchored Ubiquitin C Termini.
J.Biol.Chem., 287, 2012
3GZ9
DownloadVisualize
BU of 3gz9 by Molmil
Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd) in Complex with a Full Agonist
Descriptor: (2,3-dimethyl-4-{[2-(prop-2-yn-1-yloxy)-4-{[4-(trifluoromethyl)phenoxy]methyl}phenyl]sulfanyl}phenoxy)acetic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside
Authors:Wang, Z, Sudom, A, Walker, N.P.
Deposit date:2009-04-06
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of a PPARdelta agonist with partial agonistic activity on PPARgamma.
Bioorg.Med.Chem.Lett., 19, 2009
2FH7
DownloadVisualize
BU of 2fh7 by Molmil
Crystal structure of the phosphatase domains of human PTP SIGMA
Descriptor: Receptor-type tyrosine-protein phosphatase S
Authors:Alvarado, J, Udupi, R, Smith, D, Koss, J, Wasserman, S.R, Ozyurt, S, Atwell, S, Powell, A, Kearins, M.C, Rooney, I, Maletic, M, Bain, K.T, Freeman, J.C, Russell, M, Thompson, D.A, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2005-12-23
Release date:2006-01-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural genomics of protein phosphatases.
J.STRUCT.FUNCT.GENOM., 8, 2007
3Q3V
DownloadVisualize
BU of 3q3v by Molmil
Crystal structure of Phosphoglycerate Kinase from Campylobacter jejuni.
Descriptor: FORMIC ACID, POTASSIUM ION, Phosphoglycerate kinase, ...
Authors:Filippova, E.V, Wawrzak, Z, Onopriyenko, O, Edwards, A, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-12-22
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.145 Å)
Cite:Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.
J.Struct.Funct.Genom., 13, 2012
1L8B
DownloadVisualize
BU of 1l8b by Molmil
Cocrystal Structure of the Messenger RNA 5' Cap-binding Protein (eIF4E) bound to 7-methylGpppG
Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
Authors:Niedzwiecka, A, Marcotrigiano, J, Stepinski, J, Jankowska-Anyszka, M, Wyslouch-Cieszynska, A, Dadlez, M, Gingras, A.-C, Mak, P, Darzynkiewicz, E, Sonenberg, N.
Deposit date:2002-03-19
Release date:2002-06-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins.
J.Mol.Biol., 319, 2002
1L8R
DownloadVisualize
BU of 1l8r by Molmil
Structure of the Retinal Determination Protein Dachshund Reveals a DNA-Binding Motif
Descriptor: Dachshund
Authors:Kim, S.S, Zhang, R, Braunstein, S.E, Joachimiak, A, Cvekl, A, Hegde, R.S.
Deposit date:2002-03-21
Release date:2002-06-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of the retinal determination protein Dachshund reveals a DNA binding motif.
Structure, 10, 2002
3GOY
DownloadVisualize
BU of 3goy by Molmil
Crystal structure of human poly(adp-ribose) polymerase 14, catalytic fragment in complex with an inhibitor 3-aminobenzamide
Descriptor: 3-aminobenzamide, Poly [ADP-ribose] polymerase 14
Authors:Karlberg, T, Moche, M, Lehtio, L, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Schutz, P, Siponen, M.I, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Wisniewska, M, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2009-03-20
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors.
Nat.Biotechnol., 30, 2012
1LKN
DownloadVisualize
BU of 1lkn by Molmil
Solution NMR Structure of Protein TM_1112 from Thermotoga maritima. Ontario Centre for Structural Proteomics Target TM1112_1_89; Northeast Structural Genomics Consortium Target VT74.
Descriptor: hypothetical protein tm1112
Authors:Xia, Y, Yee, A, Semesi, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-04-25
Release date:2003-06-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of Hypothetical Protein tm1112
to be published
1VG8
DownloadVisualize
BU of 1vg8 by Molmil
GPPNHP-Bound Rab7
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-7
Authors:Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
Deposit date:2004-04-23
Release date:2004-07-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
5DJS
DownloadVisualize
BU of 5djs by Molmil
Thermobaculum terrenum O-GlcNAc transferase mutant - K341M
Descriptor: Tetratricopeptide TPR_2 repeat protein, URIDINE-5'-DIPHOSPHATE
Authors:Ostrowski, A, Gundogdu, M, Ferenbach, A.T, Lebedev, A, van Aalten, D.M.F.
Deposit date:2015-09-02
Release date:2015-10-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Evidence for a Functional O-Linked N-Acetylglucosamine (O-GlcNAc) System in the Thermophilic Bacterium Thermobaculum terrenum.
J.Biol.Chem., 290, 2015
2GTS
DownloadVisualize
BU of 2gts by Molmil
Structure of Protein of Unknown Function HP0062 from Helicobacter pylori
Descriptor: hypothetical protein HP0062
Authors:Binkowski, T.A, Xu, X, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-04-28
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Hypothetical protein HP0062 from Helicobacter pylori
To be Published
1LR1
DownloadVisualize
BU of 1lr1 by Molmil
Solution Structure of the Oligomerization Domain of the Bacterial Chromatin-Structuring Protein H-NS
Descriptor: dna-binding protein h-ns
Authors:Esposito, D, Petrovic, A, Harris, R, Ono, S, Eccleston, J, Mbabaali, A, Haq, I, Higgins, C.F, Hinton, J.C.D, Driscoll, P.C, Ladbury, J.E.
Deposit date:2002-05-14
Release date:2003-01-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:H-NS Oligomerization Domain Structure Reveals the Mechanism for High Order Self-association of the Intact Protein
J.Mol.Biol., 324, 2002
1VG1
DownloadVisualize
BU of 1vg1 by Molmil
GDP-Bound Rab7
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7
Authors:Rak, A, Pylypenko, O, Niculae, A, Pyatkov, K, Goody, R.S, Alexandrov, K.
Deposit date:2004-04-22
Release date:2004-07-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Rab7:REP-1 complex: insights into the mechanism of Rab prenylation and choroideremia disease
Cell(Cambridge,Mass.), 117, 2004
1DX9
DownloadVisualize
BU of 1dx9 by Molmil
W57A Apoflavodoxin from Anabaena
Descriptor: Flavodoxin, SULFATE ION
Authors:Romero, A, Sancho, J.
Deposit date:1999-12-23
Release date:2000-04-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Dissecting the Energetics of the Apoflavodoxin-Fmn Complex
J.Biol.Chem., 275, 2000
1VDH
DownloadVisualize
BU of 1vdh by Molmil
Structure-based functional identification of a novel heme-binding protein from thermus thermophilus HB8
Descriptor: muconolactone isomerase-like protein
Authors:Ebihara, A, Okamoto, A, Kousumi, Y, Yamamoto, H, Masui, R, Ueyama, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-22
Release date:2004-09-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8.
J.STRUCT.FUNCT.GENOM., 6, 2005
1LRY
DownloadVisualize
BU of 1lry by Molmil
Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin
Descriptor: ACTINONIN, PEPTIDE deformylase, ZINC ION
Authors:Guilloteau, J.-P, Mathieu, M, Giglione, C, Blanc, V, Dupuy, A, Chevrier, M, Gil, P, Famechon, A, Meinnel, T, Mikol, V.
Deposit date:2002-05-16
Release date:2002-07-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents.
J.Mol.Biol., 320, 2002

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon