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Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative
分子名称:	Putative modification methylase
著者	Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2008-02-15
公開日	2008-07-29
最終更新日	2011-07-13
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008

2ZIG

Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8
分子名称:	Putative modification methylase
著者	Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2008-02-15
公開日	2008-07-29
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008

2ZIF

Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine
分子名称:	Putative modification methylase, S-ADENOSYLMETHIONINE
著者	Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2008-02-15
公開日	2008-07-29
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008

2RQA

Solution structure of LGP2 CTD
分子名称:	ATP-dependent RNA helicase DHX58, ZINC ION
著者	Takahasi, K, Kumeta, H, Tsuduki, N, Narita, R, Shigemoto, T, Hirai, R, Yoneyama, M, Horiuchi, M, Ogura, K, Fujita, T, Fuyuhiko, I.
登録日	2009-03-17
公開日	2009-05-05
最終更新日	2022-03-16
実験手法	SOLUTION NMR
主引用文献	Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS J.Biol.Chem., 284, 2009

2RQB

Solution structure of MDA5 CTD
分子名称:	Interferon-induced helicase C domain-containing protein 1, ZINC ION
著者	Takahasi, K, Kumeta, H, Tsuduki, N, Narita, R, Shigemoto, T, Hirai, R, Yoneyama, M, Horiuchi, M, Ogura, K, Fujita, T, Fuyuhiko, I.
登録日	2009-03-17
公開日	2009-05-05
最終更新日	2022-03-16
実験手法	SOLUTION NMR
主引用文献	Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS J.Biol.Chem., 284, 2009

2RMJ

Solution structure of RIG-I C-terminal domain
分子名称:	Probable ATP-dependent RNA helicase DDX58
著者	Takahasi, K, Yoneyama, M, Nihishori, T, Hirai, R, Narita, R, Gale Jr, M, Fujita, T, Inagaki, F.
登録日	2007-10-23
公開日	2008-03-25
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Nonself RNA-Sensing Mechanism of RIG-I Helicase and Activation of Antiviral Immune Responses Mol.Cell, 29, 2008

4ECC

Chimeric GST Containing Inserts of Kininogen Peptides
分子名称:	chimeric protein between GSHKT10 and domain 5 of kininogen-1
著者	Amber, A.B, Sergei, M.M, Yi, P, Rita, R, Xiaoping, Q, Marianne, P.-C, William, C.M, Vivien, Y, Keith, R.M, Anton, A.K.
登録日	2012-03-26
公開日	2012-05-16
最終更新日	2023-09-13
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Chimeric glutathione S-transferases containing inserts of kininogen peptides: potential novel protein therapeutics. J.Biol.Chem., 287, 2012

4ECB

Chimeric GST Containing Inserts of Kininogen Peptides
分子名称:	chimeric protein between GSHKT10 and domain 5 of kininogen-1
著者	Amber, A.B, Sergei, M.M, Yi, P, Rita, R, Xiaoping, Q, Marianne, P.-C, William, C.M, Vivien, Y, Keith, R.M, Anton, A.K.
登録日	2012-03-26
公開日	2012-05-16
最終更新日	2023-09-13
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Chimeric glutathione S-transferases containing inserts of kininogen peptides: potential novel protein therapeutics. J.Biol.Chem., 287, 2012

7XMC

Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
分子名称:	1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
著者	Nishida, Y, Shigematsu, H, Iwamoto, T, Takashima, S, Shintani, Y.
登録日	2022-04-25
公開日	2022-12-21
最終更新日	2024-07-03
実験手法	ELECTRON MICROSCOPY (3.09 Å)
主引用文献	Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nat Commun, 13, 2022

7XMD

Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
分子名称:	1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
著者	Nishida, Y, Shigematsu, H, Iwamoto, T, Takashima, S, Shintani, Y.
登録日	2022-04-25
公開日	2022-12-21
最終更新日	2024-07-03
実験手法	ELECTRON MICROSCOPY (2.99 Å)
主引用文献	Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nat Commun, 13, 2022

7XMA

Crystal structure of Bovine heart cytochrome c oxidase, apo structure with DMSO
分子名称:	(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者	Nishida, Y, Shinzawa-Itoh, K, Mizuno, N, Kumasaka, T, Yoshikawa, S, Tsukihara, T, Takashima, S, Shintani, Y.
登録日	2022-04-25
公開日	2022-12-21
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nat Commun, 13, 2022

7XMB

Crystal structure of Bovine heart cytochrome c oxidase, the structure complexed with an allosteric inhibitor T113
分子名称:	(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者	Nishida, Y, Shinzawa-Itoh, K, Mizuno, N, Kumasaka, T, Yoshikawa, S, Tsukihara, T, Shintani, Y, Takashima, S.
登録日	2022-04-25
公開日	2022-12-21
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nat Commun, 13, 2022

5ICJ

Crystal structure of the Mycobacterium tuberculosis transcriptional repressor EthR2 in complex with BDM41420
分子名称:	4,4,4-trifluoro-1-(3-phenyl-1-oxa-2,8-diazaspiro[4.5]dec-2-en-8-yl)butan-1-one, Probable transcriptional regulatory protein
著者	Wohlkonig, A, Remaut, H, Tanina, A, Meyer, F, Willand, N, Baulard, A.R, Wintjens, R.
登録日	2016-02-23
公開日	2017-04-26
最終更新日	2024-01-10
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420. Science, 355, 2017

5N1I

unliganded form of the Mycobacterium tuberculosis repressor EthR2
分子名称:	Probable transcriptional regulatory protein
著者	Wintjens, R, Wohlkonig, A.
登録日	2017-02-06
公開日	2017-04-26
最終更新日	2024-02-07
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420. Science, 355, 2017

5N1C

Iodinated form of the Mycobacterium tuberculosis repressor EthR2
分子名称:	IODIDE ION, Probable transcriptional regulatory protein
著者	Wintjens, R, Wohlkonig, A.
登録日	2017-02-06
公開日	2017-04-26
最終更新日	2023-03-01
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420. Science, 355, 2017

5N7O

EthR2 in complex with SMARt-420 compound
分子名称:	4,4,4-trifluoro-1-(3-phenyl-1-oxa-2,8-diazaspiro[4.5]dec-2-en-8-yl)butan-1-one, Probable transcriptional regulatory protein
著者	Wohlkonig, A, Wintjens, R.
登録日	2017-02-21
公開日	2017-04-26
最終更新日	2024-01-17
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Structural analysis of the interaction between spiroisoxazoline SMARt-420 and the Mycobacterium tuberculosis repressor EthR2. Biochem. Biophys. Res. Commun., 487, 2017

7NGJ

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	4-methyl-~{N}-(phenylmethyl)piperidine-1-carboxamide, HTH-type transcriptional regulator EthR
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.89 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGO

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	HTH-type transcriptional regulator EthR, ~{N}-(furan-2-ylmethyl)-4-methyl-piperidine-1-carboxamide
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (2.37 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGD

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	4-methyl-~{N}-(4-phenylbutyl)piperidine-1-carboxamide, HTH-type transcriptional regulator EthR
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.47 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGR

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	4-methyl-~{N}-[4-(trifluoromethyl)phenyl]piperidine-1-carboxamide, HTH-type transcriptional regulator EthR
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.92 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGS

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	4-methyl-~{N}-pentyl-piperidine-1-carboxamide, HTH-type transcriptional regulator EthR
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGX

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	4-methyl-~{N}-undecyl-pyridine-1-carboxamide, HTH-type transcriptional regulator EthR
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.24 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGK

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-cyclohexyl-4-methyl-piperidine-1-carboxamide
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.89 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGN

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-cycloheptyl-4-methyl-piperidine-1-carboxamide
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.55 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

7NGT

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
分子名称:	HTH-type transcriptional regulator EthR, SULFATE ION, ~{N}-butyl-4-methyl-piperidine-1-carboxamide
著者	Tomlinson, C.W.E, Tatum, N.J, Pohl, E.
登録日	2021-02-09
公開日	2022-02-23
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (2.49 Å)
主引用文献	Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization To Be Published

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