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6WBI
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BU of 6wbi by Molmil
Cryo-EM structure of human Pannexin 1 channel with its C-terminal tail cleaved by caspase-7, in complex with CBX
分子名称: CARBENOXOLONE, Pannexin-1
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2020-09-09
実験手法ELECTRON MICROSCOPY (4.39 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBG
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BU of 6wbg by Molmil
Cryo-EM structure of human Pannexin 1 channel with its C-terminal tail cleaved by caspase-7
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBF
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BU of 6wbf by Molmil
Cryo-EM structure of wild type human Pannexin 1 channel
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
8HIL
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BU of 8hil by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
分子名称: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ...
著者Du, X, Xie, G, Hu, H, Du, J.
登録日2022-11-20
公開日2023-03-22
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
8HIM
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BU of 8him by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
分子名称: DNA (34-MER), DNA-directed RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, ...
著者Hu, H, Xie, G, Du, X, Du, J.
登録日2022-11-21
公開日2023-03-22
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
2I5E
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BU of 2i5e by Molmil
Crystal Structure of a Protein of Unknown Function MM2497 from Methanosarcina mazei Go1, Probable Nucleotidyltransferase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, Hypothetical protein MM_2497
著者Tan, K, Du, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2006-08-24
公開日2006-09-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of a hypothetical protein MM_2497 from Methanosarcina mazei Go1
To be Published
5UP2
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BU of 5up2 by Molmil
Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, Ro 25-6981, MK-801 and a GluN2B-specific Fab, at pH 6.5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GluN2B-specific Fab, ...
著者Lu, W, Du, J, Goehring, A, Gouaux, E.
登録日2017-02-01
公開日2017-03-22
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Cryo-EM structures of the triheteromeric NMDA receptor and its allosteric modulation.
Science, 355, 2017
5UOW
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BU of 5uow by Molmil
Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, MK-801 and a GluN2B-specific Fab, at pH 6.5
分子名称: (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
著者Lu, W, Du, J, Goehring, A, Gouaux, E.
登録日2017-02-01
公開日2017-03-22
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Cryo-EM structures of the triheteromeric NMDA receptor and its allosteric modulation.
Science, 355, 2017
6MAL
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BU of 6mal by Molmil
Structure of human Nocturnin C-terminal domain
分子名称: MAGNESIUM ION, Nocturnin
著者Estrella, M.A, Du, J, Korennykh, A.
登録日2018-08-28
公開日2018-09-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of Human Nocturnin Catalytic Domain.
Sci Rep, 8, 2018
8WHA
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BU of 8wha by Molmil
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ...
著者Liu, Y, Zhang, Z, Du, J.
登録日2023-09-22
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (4.05 Å)
主引用文献Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH5
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BU of 8wh5 by Molmil
Structure of DDM1-nucleosome complex in the apo state
分子名称: ATP-dependent DNA helicase DDM1, DNA (antisense strand), DNA (sense strand), ...
著者Liu, Y, Zhang, Z, Du, J.
登録日2023-09-22
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WHB
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BU of 8whb by Molmil
Structure of nucleosome core particle of Arabidopsis thaliana
分子名称: DNA (antisense strand), DNA (sense strand), Histone H2A.6, ...
著者Liu, Y, Zhang, Z, Du, J.
登録日2023-09-23
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH8
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BU of 8wh8 by Molmil
Structure of DDM1-nucleosome complex in ADP state
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, DNA (antisense strand), ...
著者Liu, Y, Zhang, Z, Du, J.
登録日2023-09-22
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH9
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BU of 8wh9 by Molmil
Structure of DDM1-nucleosome complex in ADP-BeFx state
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ...
著者Liu, Y, Zhang, Z, Du, J.
登録日2023-09-22
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
4IUR
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BU of 4iur by Molmil
crystal structure of SHH1 SAWADEE domain in complex with H3K9me3 peptide
分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ...
著者Patel, D.J, Du, J.
登録日2013-01-21
公開日2013-05-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
Nature, 498, 2013
7XPJ
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BU of 7xpj by Molmil
crystal structure of rice ASI1 BAH domain
分子名称: BAH domain-containing protein
著者Yuan, J, Du, J.
登録日2022-05-04
公開日2023-01-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.
Proc.Natl.Acad.Sci.USA, 120, 2023
7XPK
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BU of 7xpk by Molmil
crystal structure of rice ASI1 BAH domain in complex with a rice SUVH6 peptide
分子名称: Alpha-aminoacylpeptide hydrolase, BAH domain-containing protein
著者Yuan, J, Du, J.
登録日2022-05-04
公開日2023-01-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.
Proc.Natl.Acad.Sci.USA, 120, 2023
5YKO
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BU of 5yko by Molmil
Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide
分子名称: H3(1-10)K4me3 peptide, N-OXALYLGLYCINE, NICKEL (II) ION, ...
著者Yang, Z, Du, J.
登録日2017-10-15
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
5YKN
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BU of 5ykn by Molmil
crystal structure of Arabidopsis thaliana JMJ14 catalytic domain
分子名称: NICKEL (II) ION, Probable lysine-specific demethylase JMJ14, ZINC ION
著者Yang, Z, Du, J.
登録日2017-10-15
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
5WP6
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BU of 5wp6 by Molmil
Cryo-EM structure of a human TRPM4 channel in complex with calcium and decavanadate
分子名称: DECAVANADATE, Transient receptor potential cation channel subfamily M member 4
著者Winkler, P.A, Huang, Y, Sun, W, Du, J, Lu, W.
登録日2017-08-03
公開日2017-12-13
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Electron cryo-microscopy structure of a human TRPM4 channel.
Nature, 552, 2017
5ZNP
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BU of 5znp by Molmil
Crystal structure of PtSHL in complex with an H3K4me3 peptide
分子名称: 15-mer peptide from Histone H3.2, SHORT LIFE family protein, ZINC ION
著者Lv, X, Du, J.
登録日2018-04-10
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
5ZNR
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BU of 5znr by Molmil
Crystal structure of PtSHL in complex with an H3K27me3 peptide
分子名称: 17-mer peptide from Histone H3.2, SHORT LIFE family protein, SULFATE ION, ...
著者Lv, X, Du, J.
登録日2018-04-10
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.202 Å)
主引用文献Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
7W82
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BU of 7w82 by Molmil
Crystal structure of maize RDR2
分子名称: RNA-dependent RNA polymerase
著者Du, X, Yang, Z, Du, J.
登録日2021-12-07
公開日2022-06-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W88
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BU of 7w88 by Molmil
CryoEM structure of open form ZmRDR2 at 3.5 Angstroms resolution
分子名称: RNA-dependent RNA polymerase
著者Du, X, Yang, Z, Du, J.
登録日2021-12-07
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W84
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BU of 7w84 by Molmil
CryoEM structure of apo form ZmRDR2 at 3.4 Angstroms resolution
分子名称: RNA-dependent RNA polymerase
著者Du, X, Yang, Z, Du, J.
登録日2021-12-07
公開日2022-06-08
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022

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