Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide

Summary for 5YKO

DescriptorProbable lysine-specific demethylase JMJ14, H3(1-10)K4me3 peptide, NICKEL (II) ION, ... (5 entities in total)
Functional Keywordsjmj14, jumonji domain, c5hc2 zinc finger, h3k4me3 demethylase, gene regulation
Biological sourceArabidopsis thaliana (Mouse-ear cress)
Cellular locationNucleus, nucleoplasm  Q8GUI6
Nucleus  P59226
Total number of polymer chains2
Total molecular weight66530.84
Yang, Z.,Du, J. (deposition date: 2017-10-15, release date: 2017-12-27, Last modification date: 2018-02-28)
Primary citation
Yang, Z.,Qiu, Q.,Chen, W.,Jia, B.,Chen, X.,Hu, H.,He, K.,Deng, X.,Li, S.,Tao, W.A.,Cao, X.,Du, J.
Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30:167-177, 2018
PubMed: 29233856 (PDB entries with the same primary citation)
DOI: 10.1105/tpc.17.00666
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.245903.7%2.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5yko
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Molmil generated image of 5yko
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Molmil generated image of 5yko
rotated about y axis by 90°
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