5YKO
Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue NI A 800 |
| Chain | Residue |
| A | HIS309 |
| A | GLU311 |
| A | HIS397 |
| A | OGA803 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 801 |
| Chain | Residue |
| A | CYS519 |
| A | CYS522 |
| A | CYS542 |
| A | HIS545 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 802 |
| Chain | Residue |
| A | CYS535 |
| A | CYS550 |
| A | CYS552 |
| A | CYS533 |
| site_id | AC4 |
| Number of Residues | 13 |
| Details | binding site for residue OGA A 803 |
| Chain | Residue |
| A | TYR236 |
| A | TYR298 |
| A | PHE306 |
| A | HIS309 |
| A | GLU311 |
| A | SER317 |
| A | ASN319 |
| A | LYS327 |
| A | TRP329 |
| A | HIS397 |
| A | ALA409 |
| A | NI800 |
| P | M3L4 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 41 |
| Details | Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 166 |
| Details | Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 52 |
| Details | Zinc finger: {"description":"C5HC2","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 7 |
| Details | Motif: {"description":"Nuclear localization signal 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00768","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | Site: {"description":"Involved in histone H3A7 recognition","evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | Site: {"description":"Involved in histone H3R2 recognition","evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | Site: {"description":"Involved in histone H3K4me3 recognition","evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 1 |
| Details | Site: {"description":"Involved in histone H3Q5 recognition","evidences":[{"source":"PubMed","id":"29233856","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YKN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
