[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,012 items for (author: zhang & yn)

EMDB-66671:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

PDB-9x9t:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-82115:
In Situ Subtomogram Average of the 80S Ribosome in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82118:
In Situ Subtomogram Average of the 60S Ribosomal Subunit in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82119:
In Situ Subtomogram Average of the Free 60S Ribosomal Subunit in the Soma of Rat Hippocampal Neuron
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82120:
In Situ Subtomogram Average of the 80S Ribosome in the Soma of Rat Hippocampal Neurons
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-75432:
The CryoEM structure of T8 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75433:
The CryoEM structure of T10 type1 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10se:
The CryoEM structure of T8 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sf:
The CryoEM structure of T10 type1 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75624:
SNAIL-GB1-LHC-Nucleosome complex (E-box in linker region)
Method: single particle / : Osorio Valeriano M, Farnung L

EMDB-75625:
SNAIL-GB1-LHC-Nucleosome complex (E-box in entry site)
Method: single particle / : Osorio Valeriano M, Farnung L

EMDB-75431:
The cryoEM structure of T10 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75434:
The CryoEM structure of T12 type1 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75435:
The CryoEM structure of T12 type2 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sd:
The cryoEM structure of T10 type2 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sg:
The CryoEM structure of T12 type1 nanofiber
Method: helical / : Zhang H, Yang Y

PDB-10sh:
The CryoEM structure of T12 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-74654:
Cryo-EM structure of SHIV-elicited CE79-1571 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-74655:
Cryo-EM structure of SHIV-elicited CN81-2029 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-74656:
Cryo-EM structure of SHIV-elicited CI93-1365 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9zrx:
Cryo-EM structure of SHIV-elicited CE79-1571 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9zry:
Cryo-EM structure of SHIV-elicited CN81-2029 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9zrz:
Cryo-EM structure of SHIV-elicited CI93-1365 Fab in complex with HIV Env trimer Q23-SCT27
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-71823:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

PDB-9ps5:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-70622:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and AR3C
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-70623:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and HEPC74
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-48385:
CGRP Receptor in complex with C8 Minibinder
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mm5:
CGRP Receptor in complex with dC2_049
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-63352:
S-ECD of SARS-CoV-2 Delta variant in complex with Fab854
Method: single particle / : Li YN, Yan RH, Ju B, Zhang Z

EMDB-62660:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62661:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Method: single particle / : Qiu YN, Sun L

EMDB-62680:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Method: single particle / : Qiu YN, Sun L

EMDB-62687:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Method: single particle / : Qiu YN, Sun L

EMDB-62691:
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62729:
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62731:
Focused refinement up-RBD1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62733:
Focused refinement up-RBD2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

EMDB-62734:
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Method: single particle / : Qiu YN, Sun L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more