[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,204 items for (author: you & ll)

EMDB-70396:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-9oee:
S. griseus TUA bound UmbA4 complexes
Method: helical / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-53655:
Human Adenovirus D 10 Fiber Shaft by Focussed Refinement
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, T Young M, Parker AL, Bhella D

EMDB-53736:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

PDB-9r78:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

EMDB-73973:
Streptomyces coelicolor UmbA4 complex
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Mougous JD, Veesler D

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-71113:
ExoSloNano: STA on nucleosomes from cryo-FIB-ET
Method: subtomogram averaging / : Young L, Zhou H, Villa E

EMDB-71202:
ExoSloNano, STA of 1.4 nm NG labeling of the ribosome from vitreous cells
Method: subtomogram averaging / : Young L, Villa E

EMDB-71205:
ExoSloNano proof of principle labeling the ribosome in intact and vitreous cells with 5 nm NG
Method: subtomogram averaging / : Young L, Villa E

EMDB-71211:
ExoSloNano: labeling macroH2A nucleosomes with 1.4 nm NG in intact cells.
Method: subtomogram averaging / : Young L, Huabin Z, Villa E

EMDB-62390:
Cryo-EM structure of human SLC22A6 (OAT1) in the apo-state
Method: single particle / : Jeon HM, Eun J, Kim Y

EMDB-62400:
Cryo-EM strucuture of human OAT1 in complex with probenecid
Method: single particle / : Jeon HM, Eun J, Kim Y

EMDB-62418:
Human OAT1 in complex with olmesartan
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

EMDB-64368:
Cryo-EM structure of human OAT1 in complex with olmesartan and bromide ion.
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

PDB-9kkk:
Cryo-EM structure of human SLC22A6 (OAT1) in the apo-state
Method: single particle / : Jeon HM, Eun J, Kim Y

PDB-9kl5:
Cryo-EM strucuture of human OAT1 in complex with probenecid
Method: single particle / : Jeon HM, Eun J, Kim Y

PDB-9klz:
Human OAT1 in complex with olmesartan
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

PDB-9unx:
Cryo-EM structure of human OAT1 in complex with olmesartan and bromide ion.
Method: single particle / : Jeon HM, Eun J, Kim KH, Kim Y

EMDB-53880:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-53882:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9raw:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9rax:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-45885:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-48826:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49380:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49522:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Method: single particle / : Khan YA, Brunger AT

EMDB-49524:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Method: single particle / : Khan YA, Brunger AT

EMDB-49526:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Method: single particle / : Khan YA, Brunger AT

EMDB-49527:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 8
Method: single particle / : Khan YA, Brunger AT

EMDB-49528:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - All Merge (Class 9, focused on D1/D2)
Method: single particle / : Khan YA, Brunger AT

EMDB-49801:
Y20S after Mg2+ (Sec18) - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49802:
Y20S after Mg2+ (Sec18) - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-49824:
Y20S after Mg2+ (Sec18) - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49825:
Sec18 Mg2+ class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49826:
Sec18 Mg2+ class 1
Method: single particle / : Khan YA, Brunger AT

EMDB-49831:
NSF Mg2+ class 1 heptamer
Method: single particle / : Khan YA, Brunger AT

EMDB-49833:
NSF Mg2+ class 2 hexamer
Method: single particle / : Khan YA, Brunger AT

EMDB-70472:
Y20S hydrolyzing Class 1
Method: single particle / : Khan YA, Brunger AT

PDB-9crx:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3
Method: single particle / : Khan YA, Brunger AT

PDB-9n22:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 2
Method: single particle / : Khan YA, Brunger AT

PDB-9ng2:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Method: single particle / : Khan YA, Brunger AT

PDB-9nlu:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Method: single particle / : Khan YA, Brunger AT

PDB-9nlw:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Method: single particle / : Khan YA, Brunger AT

PDB-9nly:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Method: single particle / : Khan YA, Brunger AT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more