[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 158 items for (author: yeo & th)

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-48575:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48591:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msd:
G002-293-0536 Fab in complex with 001428_T278M_L14 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9msy:
G002-480-0546 Fab in complex with V703-0537_T278M_L14 SOSIP and BG18 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70493:
BG505 GT1.1 SOSIP in complex with CD4bs epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70494:
BG505 GT1.1 SOSIP in complex with gp41 glycan hole epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70495:
BG505 GT1.1 SOSIP in complex with gp41 fusion peptide epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

PDB-9mi0:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mia:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mib:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mih:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9mii:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-39633:
Cryo-EM structure of small and dead form SaCas9-RNA-DNA ternary complex (sdCas9)
Method: single particle / : Kang ES, Kim NH, Thach TT, Hyun J, Kim YH

PDB-8ywh:
Cryo-EM structure of small and dead form SaCas9-RNA-DNA ternary complex (sdCas9)
Method: single particle / : Kang ES, Kim NH, Thach TT, Hyun J, Kim YH

EMDB-60697:
CODANIN-1 sequesters ASF1 by using a histone H3 mimic helix to regulate histone supply
Method: single particle / : Jeong TK, Frater RCM, Yoon J, Groth A, Song JJ

PDB-9imz:
CODANIN-1 sequesters ASF1 by using a histone H3 mimic helix to regulate histone supply
Method: single particle / : Jeong TK, Frater RCM, Yoon J, Groth A, Song JJ

EMDB-50326:
Betaglycan in complex with TGF-b1
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50333:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

EMDB-50519:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50524:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fdy:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

PDB-9fk5:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fkp:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9mk9:
Structure of the IFIT2-IFIT3 heterodimer from Mus musculus
Method: single particle / : Glasner DR, Todd C, Cook BD, DUrso A, Khosla S, Estrada E, Wagner J, Bartels MD, Ford P, Prych J, Hatch K, Yee BA, Ego KM, Liang Q, Holland SR, Case JB, Corbett KD, Diamond MS, Yeo GW, Herzik Jr MA, Van Nostrand EL, Daugherty MD

EMDB-47572:
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Rad54peptide
Method: single particle / : Shin Y, Greene EC

EMDB-47573:
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Hed1
Method: single particle / : Shin Y, Greene EC

PDB-9e6l:
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Rad54peptide
Method: single particle / : Shin Y, Greene EC

PDB-9e6n:
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Hed1
Method: single particle / : Shin Y, Greene EC

EMDB-43413:
The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4IPR310delinsTTYML
Method: single particle / : Xie X, Liau B, Zheng N

EMDB-43487:
The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4R313PRR mutant
Method: single particle / : Xie X, Liau B, Zheng N

EMDB-47156:
The structure of HDAC2-CoREST in complex with KBTBD4R313PRR mutant
Method: single particle / : Xie X, Liau B, Zheng N

PDB-8vpq:
The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4IPR310delinsTTYML
Method: single particle / : Xie X, Liau B, Zheng N

PDB-8vrt:
The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4R313PRR mutant
Method: single particle / : Xie X, Liau B, Zheng N

PDB-9dtq:
The structure of HDAC2-CoREST in complex with KBTBD4R313PRR mutant
Method: single particle / : Xie X, Liau B, Zheng N

EMDB-42839:
Structure of UT14 Fab in complex with the head domain of H3 (A/Singapore/INFIMH-16-0019/2016)
Method: single particle / : Park J, Georgiou G

PDB-8uzc:
Structure of UT14 Fab in complex with the head domain of H3 (A/Singapore/INFIMH-16-0019/2016)
Method: single particle / : Park J, Georgiou G

EMDB-43092:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43093:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more