[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,865 items for (author: wu & k)

EMDB-64791:
CryoEM structure of human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

PDB-9v5p:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

EMDB-75307:
CRYO-EM STRUCTURE OF THE A149T DIMER VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP
Method: single particle / : Beamer LJ, Samarakoon V, Buckley DP, Owuocha LF, Durie CL, Mitchum MG

PDB-10nm:
CRYO-EM STRUCTURE OF THE A149T DIMER VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP
Method: single particle / : Beamer LJ, Samarakoon V, Buckley DP, Owuocha LF, Durie CL, Mitchum MG

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-65106:
Type II-A CRISPR integrase complex, apo form
Method: single particle / : Li Z, Li Y, Wu Q, Lu M, Xiao Y

EMDB-65107:
Raw consensus map of Type II-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65108:
Type I-A CRISPR integrase prespacer catching complex, State II
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

EMDB-65109:
Type II-A CRISPR integrase pre-integration complex
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

PDB-9vj8:
Type II-A CRISPR integrase complex, apo form
Method: single particle / : Li Z, Li Y, Wu Q, Lu M, Xiao Y

PDB-9vj9:
Type I-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

PDB-9vja:
Type I-A CRISPR integrase prespacer catching complex, State II
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

PDB-9vjb:
Type II-A CRISPR integrase pre-integration complex
Method: single particle / : Li ZX, Li YT, Lu ML, Xiao YB

PDB-9xfk:
In situ structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

PDB-9xfl:
In vitro structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-63691:
At S3 trimer
Method: single particle / : Zhang SS

EMDB-63692:
At S1+2S3 trimer
Method: single particle / : Zhang SS

EMDB-63695:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

PDB-9m7r:
At S3 trimer
Method: single particle / : Zhang SS

PDB-9m7s:
At S1+2S3 trimer
Method: single particle / : Zhang SS

PDB-9m7w:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

EMDB-49770:
Cryo-EM structure of human SRCAP-nucleosome complex in the fully-engaged state (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49771:
RuvBL core from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49772:
ARP6-ZNHIT1 module from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49773:
ATPase module from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49774:
Nucleosome from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49775:
Cryo-EM structure of human SRCAP-nucleosome complex in the partially-engaged state (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49776:
RuvBL core from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49777:
ARP6-ZNHIT1 module from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49778:
Nucleosome from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49779:
ATPase module from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49780:
Cryo-EM structure of human SRCAP-nucleosome complex in the pre-engaged state (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49781:
RuvBL core from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49782:
ARP6-ZNHIT1 module from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49783:
Nucleosome from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49784:
Cryo-EM structure of human SRCAP complex in the unbound state (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49785:
RuvBL core from unbound SRCAP complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49786:
ARP6-ZNHIT1 module from unbound SRCAP complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49787:
Cryo-EM structure of human SRCAP-nucleosome complex in the encounter state (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49788:
RuvBL core from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49789:
ARP6-ZNHIT1 module from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49790:
ATPase module from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49791:
Nucleosome from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49850:
Cryo-EM structure of the TRRAP lobe of the native human TIP60 complex (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

EMDB-49851:
TRRAP lobe of the native human TIP60 complex, core region (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49852:
TRRAP lobe of the native human TIP60 complex, top region (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49853:
TRRAP lobe of the native human TIP60 complex, bottom region (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49854:
TRRAP lobe of the native human TIP60 complex, distal region (focused refinement)
Method: single particle / : Louder RK, Park G

EMDB-49878:
Cryo-EM structure of the RuvBL lobe of the native human TIP60 complex (consensus map filtered by local resolution)
Method: single particle / : Louder RK, Park G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more