[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 821 items for (author: way & m)

EMDB-49649:
Structural Basis of Pseudomonas FapC Biofilm-Forming Functional Amyloid Formation
Method: helical / : Hansen KH, Golcuk M, Byeon CB, Plechinger EB, Conway JF, Andreasen M, Gur M, Akbey U

PDB-9nqd:
Structural Basis of Pseudomonas FapC Biofilm-Forming Functional Amyloid Formation
Method: helical / : Hansen KH, Golcuk M, Byeon CB, Plechinger EB, Conway JF, Andreasen M, Gur M, Akbey U

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-70610:
Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70612:
Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70630:
Consensus map: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70631:
Focused map of CUL5-RBX2: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70632:
Focused map of PCMTD1-ELOBC: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-70633:
Focused map of PCMTD1: Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

PDB-9oma:
Cryo-EM structure of PCMTD1-ELOBC-CUL5-RBX2 (CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

PDB-9omf:
Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Method: single particle / : Pang EZ, Zhao B, Flowers C, Oroudjeva E, Winters JB, Pandey V, Sawaya MR, Wohlschlegel W, Loo JA, Rodriguez JA, Clarke SG

EMDB-46656:
Mycobacteriophage Bxb1 tail tip - Consensus C3 map
Method: single particle / : Freeman KG

EMDB-46657:
Mycobacteriophage Bxb1 tail tip - Tail spike C1 local refinement
Method: single particle / : Freeman KG

EMDB-46658:
Mycobacteriophage Bxb1 tail tip - Tail wings C1 local refinement
Method: single particle / : Freeman KG

EMDB-46659:
Mycobacteriophage Bxb1 tail tip - Tail collar and fibers C1 local refinement
Method: single particle / : Freeman KG

EMDB-48066:
Subtomogram averaging of Bxb1 phage tail tip (infection state)
Method: subtomogram averaging / : Park D, Mondal S

EMDB-48067:
Subtomogram averaging of Bxb1 phage tail tip (infection state, extra density within cell wall)
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-48705:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

EMDB-48713:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

PDB-9mwz:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

PDB-9mxc:
Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)
Method: single particle / : Xu L, Pintilie G, Varanese L, Carette JE, Chiu W

PDB-9n9d:
MicroED structure of papain co-crystallized with E-64C
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nae:
MicroED structure of papain co-crystallized with E-64
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nag:
MicroED structure of the apo-form of papain
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nao:
MicroED structure of papain complexed with natural product E64-A65
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nar:
MicroED structure of papain microcrystals soaked with E-64 for 10 minutes
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nax:
MicroED structure of the papain-E-64 complex from microcrystals soaked with crude biosynthetic reaction mixture
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nay:
MicroED structure of papain complexed with natural product E-64-A65 from microcrystals soaked in crude biosynthetic reaction mixture
Method: electron crystallography / : Vlahakis NW, Rodriguez JA

PDB-9nbp:
MicroED structure of the papain-E-64 complex from microcrystals mixed on-grid with microarrayed ligand
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nbq:
MicroED structure of papain co-crystallized with E-64D
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nc1:
MicroED structure of papain-E-64 complex from microcrystals soaked with protease inhibitor cocktail
Method: electron crystallography / : Vlahakis N, Rodriguez JA

PDB-9nca:
MicroED structure of microcrystals soaked with a mixture of E-64, E-64C, and E-64D
Method: electron crystallography / : Vlahakis N, Rodriguez JA

EMDB-50326:
Betaglycan in complex with TGF-b1
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50333:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

EMDB-50519:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

EMDB-50524:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fdy:
Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Cherepanov P, Punch E, Hinck AP, Hill CS

PDB-9fk5:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-B3 and extracellular domains of TGFBRI and TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9fkp:
Zebrafish Betaglycan Orphan Domain (zfBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Method: single particle / : Wieteska L, Coleman JA, Hinck AP

PDB-9d5c:
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Method: helical / : Balana JA, Nguyen AB, Sawaya M, Murzin AG, Saelices L, Pratt RM

EMDB-44181:
Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44182:
Filament of D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44183:
Filament of D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44184:
Filament of Tau in complex with D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44185:
Filament of Tau in complex with D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44186:
Filament of Tau in complex with D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44187:
Alzheimer's Tau Paired Helical Filaments, determined by CryoEM, before addition of D-peptide disaggregants
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

PDB-9b4i:
Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more