[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 80 items for (author: vinothkumar & kr)

EMDB-61238:
MprF from Pseudomonas aeruginosa in GDN micelle, C2 symmetry
Method: single particle / : Jha S, Vinothkumar KR

EMDB-61239:
MprF from Pseudomonas aeruginosa in GDN micelle, C1 symmetry
Method: single particle / : Jha S, Vinothkumar KR

EMDB-61240:
MprF from Pseudomonas aeruginosa in nanodisc, C2 symmetry
Method: single particle / : Jha S, Vinothkumar KR

EMDB-64825:
Structure of FtsZ1 in complex with GMPCPP from Candidatus Odinarchaeota
Method: helical / : Bose S, Kutti RV

EMDB-63588:
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Method: single particle / : Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal BK

EMDB-63589:
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, in complex with aminotriazole
Method: single particle / : Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal BK

EMDB-63590:
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
Method: single particle / : Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal BK

EMDB-18060:
CryoEM structure of canonical rice nucleosome core particle
Method: single particle / : Sotelo-Parrilla P, Hari Sundar G V, Raju S, Jha S, Gireesh A, Gut F, Vinothkumar KR, Berger F, Shivaprasad PV, Jeyaprakash AA

EMDB-18061:
CryoEM structure of rice nucleosome containing a H4 variant chimera
Method: single particle / : Sotelo-Parrilla P, Hari Sundar G V, Raju S, Jha S, Gireesh A, Gut F, Vinothkumar KR, Berger F, Shivaprasad PV, Jeyaprakash AA

EMDB-38925:
Sialic acid bound form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Method: single particle / : Goyal P, Ramaswamy S, Vinothkumar KR

EMDB-38926:
Apo form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Method: single particle / : Goyal P, Ramaswamy S, Vinothkumar KR

EMDB-37973:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with Quisqualate and VU0424465
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37974:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and VU0424465, conformer 1
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37975:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and VU0424465, conformer 2
Method: single particle / : Lebon G, Cannone G, Vinothkumar KR

EMDB-37976:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with agonist and PAM, W785A mutant
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37977:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate and PAM VU29
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37978:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate, Acc conformation (purified with PAM VU0409551 but not modelled)
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37979:
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with quisqualate, Rcc conformation
Method: single particle / : Vinothkumar KR, Lebon G, Cannone G

EMDB-37864:
C-reactive protein, pentamer
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37865:
C-reactive protein, decamer
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37866:
PaaZ, bifunctional enzyme
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37952:
Human erythrocyte catalase with SLS as additive during cryo-EM grid preparation
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37953:
One RBD up state of Spike glycoprotein, SARS-CoV-2
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37954:
Human erythrocyte catalase
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37955:
Human erythrocyte catalase
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-37956:
Human erythrocyte catalase with CTAB as additive during EM sample preparation
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-39808:
E.coli. beta-galactosidase
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-39809:
Beta-Galactosidase with N-terminus poly-histidine tag
Method: single particle / : Yadav S, Vinothkumar KR

EMDB-34265:
CryoEM structure of human Pannexin isoform 3
Method: single particle / : Hussain N, Penmatsa A

EMDB-34266:
CryoEM structure of human Pannexin1 with R217H congenital mutation.
Method: single particle / : Hussain N, Penmatsa A

EMDB-34267:
Cryo-EM structure of human Pannexin1 resembling Pannexin2 pore with W74R/R75Dmutations
Method: single particle / : Hussain N, Penmatsa A

EMDB-34268:
human Pannexin1
Method: single particle / : Hussain N, Penmatsa A, Vinothkumar KR

EMDB-33540:
Cryo-EM structure of the Mycobacterium smegmatis DNA integrity scanning protein (MsDisA).
Method: single particle / : Gautam S, Vinothkumar KR, Chatterji D

PDB-7y0d:
Cryo-EM structure of the Mycobacterium smegmatis DNA integrity scanning protein (MsDisA).
Method: single particle / : Gautam S, Vinothkumar KR, Chatterji D

EMDB-31655:
T.thermophilus 30S ribosome with KsgA, class K1k2
Method: single particle / : Raina R, Singh J

EMDB-31656:
T.thermophilus 30S ribosome with KsgA, class K1k4
Method: single particle / : Raina R, Singh J

EMDB-31657:
T.thermophilus 30S ribosome with KsgA, class K2
Method: single particle / : Raina R, Singh J

EMDB-31658:
T.thermophilus 30S ribosome with KsgA, class K4
Method: single particle / : Raina R, Singh J

EMDB-31659:
T.thermophilus 30S ribosome with KsgA, class K5
Method: single particle / : Raina R, Singh J

EMDB-31660:
T.thermophilus 30S ribosome with KsgA, class K6
Method: single particle / : Raina R, Singh J

EMDB-32357:
Dimethylformamidase, 2x(A2B2)
Method: single particle / : Vinothkumar KR, Subramanian R

EMDB-30988:
Structure of Enolase from Mycobacterium tuberculosis
Method: single particle / : Bose S, Vinothkumar KR

EMDB-30989:
Structure of PEP bound Enolase from Mycobacterium tuberculosis
Method: single particle / : Bose S, Vinothkumar KR

EMDB-31536:
Thermostabilised full length human mGluR5-5M bound with L-quisqualic acid
Method: single particle / : Vinothkumar KR, Cannone G

EMDB-31537:
Thermostabilised full length human mGluR5-5M with orthosteric antagonist, LY341495
Method: single particle / : Vinothkumar KR, Cannone G

EMDB-13256:
Human erythrocyte catalase cryoEM
Method: single particle / : Chen S, Li J

EMDB-0988:
Structure of Dimethylformamidase, tetramer
Method: single particle / : Arya CA, Yadav S

EMDB-0989:
Structure of Dimethylformamidase, dimer
Method: single particle / : Arya CA, Yadav S

EMDB-0990:
Structure of Dimethylformamidase, tetramer, Y440A mutant
Method: single particle / : Arya CA, Yadav S

EMDB-0991:
Structure of Dimethylformamidase, tetramer, E521A mutant
Method: single particle / : Arya CA, Yadav S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more