[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 16,449 items for (author: si & k)

EMDB-70719:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

PDB-9opj:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-54890:
Consensus map of ternary PROTAC-mediated complex consisting of Cereblon, DDB1 and BRD4-BD1, non-covalently linked by JQ1-AcN
Method: single particle / : Fischer G, Peter D, Arce-Solano S, Kessler D

EMDB-54891:
Focussed map of ternary PROTAC-mediated complex consisting of Cereblon, DDB1 and BRD4-BD1, non-covalently linked by JQ1-AcN
Method: single particle / : Fischer G, Peter D, Arce-Solano S, Kessler D

EMDB-76279:
Moorella thermoacetica LarC (conformation 1)
Method: single particle / : Kim KH, Wolfe R

EMDB-76280:
Moorella thermoacetica LarC (conformation 2)
Method: single particle / : Kim KH, Wolfe R

EMDB-76281:
Moorella thermoacetica LarC (conformation 3)
Method: single particle / : Kim KH, Wolfe R

EMDB-76282:
Moorella thermoacetica LarC in complex with P2TAD
Method: single particle / : Kim KH, Wolfe R

EMDB-54482:
MVV CSC intasome in complex with LEDGF
Method: single particle / : Punch EK, Hope J, Cherepanov P

EMDB-48851:
Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

PDB-9n3i:
Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution
Method: single particle / : Jespersen N, Singhal A, Prajapati JD, Sanbonmatsu K

EMDB-54431:
Focused map of the N-Terminal cytosolic shell part, Apo-state RyR1 in the native membrane solved by "SPA"
Method: single particle / : Mikirtumov V

EMDB-54433:
Focused map of the BSol cytosolic shell part, Apo-state RyR1 in the native membrane solved by "SPA"
Method: single particle / : Mikirtumov V

EMDB-54435:
Focused map of the CSol activation core part, Apo-state RyR1 in the native membrane solved by "SPA"
Method: single particle / : Mikirtumov V

EMDB-54437:
Focused map of the TMD/TaF/CTD part, Apo-state RyR1 in the native membrane solved by "SPA"
Method: single particle / : Mikirtumov V

EMDB-54438:
Consensus map, Apo-state RyR1 in the native membrane solved by "SPA"
Method: single particle / : Mikirtumov V

EMDB-54445:
Apo-state RyR1 in the native membrane solved by "SPA
Method: single particle / : Mikirtumov V

EMDB-54449:
Consensus map, Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54450:
Focused map of the N-Terminal cytosolic shell part, Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54451:
Focused map of the BSol cytosolic shell part, Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54452:
Focused map of the CSol activation core part, Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54453:
Focused map of the TMD/TaF/CTD part, Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54454:
Apo-state RyR1 with ACP in the native membrane
Method: single particle / : Mikirtumov V

EMDB-73448:
Structure of Tau SF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73449:
Structure of Tau PHF from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73450:
Structure of Tau CTE from LATE (case 1)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73451:
Structure of Tau SF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73452:
Structure of Tau PHF from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-73453:
Structure of Tau CTE from LATE (case 2)
Method: helical / : Rana JK, Mosalaganti S

EMDB-71555:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

PDB-9pea:
Cryo-EM structure of full-length human TRPV1 in complex with analgesic MSP20
Method: single particle / : Neuberger A, Talyzina IA, Romeo I, Aiello F, Maramai S, Alcaro S, Artese A, Brizzi A, Sobolevsky AI

EMDB-48061:
Octopus ribosome, hybrid 80S
Method: single particle / : Gao J, Yip MCJ, Han R, Grearson A, Shao S, Lee ASY

PDB-9eho:
Octopus ribosome, hybrid 80S
Method: single particle / : Gao J, Yip MCJ, Han R, Grearson A, Shao S, Lee ASY

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-65226:
Cryo-EM Structure of GPR158 in Complex with RGS7-Gbeta5 and Nanobody Nb20
Method: single particle / : Laboute T, Zucca S, Sial M, Sharma M, Brunori G, Singh S, Singh A, Martemyanov K

PDB-9vos:
Cryo-EM Structure of GPR158 in Complex with RGS7-Gbeta5 and Nanobody Nb20
Method: single particle / : Laboute T, Zucca S, Sial M, Sharma M, Brunori G, Singh S, Singh A, Martemyanov K

EMDB-71850:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71851:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71852:
Mitochondria with amorphous calcium phosphate granules from 1 DIV embryonic rat cortical neurons.
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71853:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons.
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71859:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71860:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71861:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71862:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71863:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71864:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-73706:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more