[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 15,114 items for (author: si & k)

EMDB-56294:
Plasmodium falciparum gametocyte microtubule with 15 protofilaments determined in situ
Method: subtomogram averaging / : Ferreira JL

EMDB-70517:
Anthoceros agrestis Rubisco (8 RbcL and 8 RbcS1) head to head stacking.
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-70520:
A. agrestis Rubisco (8 RbcL 7 RbcS 1 RbcS-STAR)
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-53029:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdl:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-50014:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

PDB-9evt:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

EMDB-53563:
Non-uniform refine map MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53564:
Focussed map (top) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53565:
Focussed map (bottom) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53566:
Focussed map (middle) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-70169:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70171:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3C-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70172:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-HA-BCCP Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-54629:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54630:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54631:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54632:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6r:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6s:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6t:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6u:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-75340:
Cryo-EM structure of Sudan Ebolavirus GP bound by three neutralizing antibodies 316L, 523S and 294S
Method: single particle / : Cheng J, Zhao B, Misasi J, Pierson TC, Sullivan NJ, Zhou T, Kwong PD

PDB-10or:
Cryo-EM structure of Sudan Ebolavirus GP bound by three neutralizing antibodies 316L, 523S and 294S
Method: single particle / : Cheng J, Zhao B, Misasi J, Pierson TC, Sullivan NJ, Zhou T, Kwong PD

EMDB-47204:
Fluorescently Guided FIB Milled AAVs in HeLa Cells
Method: electron tomography / : Sica A, Zaoralova M, Dahlberg P

EMDB-75339:
Cryo-EM structure of Sudan Ebolavirus GP bound by three neutralizing antibodies 545S, 523S and 294S
Method: single particle / : Cheng J, Zhao B, Misasi J, Pierson TC, Sullivan NJ, Zhou T, Kwong PD

PDB-10op:
Cryo-EM structure of Sudan Ebolavirus GP bound by three neutralizing antibodies 545S, 523S and 294S
Method: single particle / : Cheng J, Zhao B, Misasi J, Pierson TC, Sullivan NJ, Zhou T, Kwong PD

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-53571:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

EMDB-53572:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4x:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4y:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

EMDB-53884:
A53T alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53885:
A53T alpha-synuclein fibril - Type 2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53886:
Wild-type alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53887:
Wild-type alpha-synuclein fibril - Type 3-1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53888:
Wild-type alpha-synuclein fibril - Type 3-2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53889:
Wild-type alpha-synuclein fibril - Type 4
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53890:
Wild-type alpha-synuclein fibril - Type 5
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb3:
A53T alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb6:
A53T alpha-synuclein fibril - Type 2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb7:
Wild-type alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb8:
Wild-type alpha-synuclein fibril - Type 3-1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb9:
Wild-type alpha-synuclein fibril - Type 3-2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rba:
Wild-type alpha-synuclein fibril - Type 4
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rbb:
Wild-type alpha-synuclein fibril - Type 5
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more