[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,671 items for (author: sen & a)

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-72014:
Latent-state loperamide-mu opioid receptor-Gi GDPbS complex (rebound) - Consensus map
Method: single particle / : Gati C, Khan S, Han GW

EMDB-67081:
Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
Method: subtomogram averaging / : Yanagisawa H, Miyata T, Kinoshita M, Kikkawa M, Namba K, Makino F

PDB-23wi:
Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
Method: subtomogram averaging / : Yanagisawa H, Makino F, Eisenstein F, Miyata T, Kinoshita M, Kikkawa M, Namba K

EMDB-80106:
Cryo-EM structure of the Helicobacter pylori ferritin-I69C
Method: single particle / : Wang N, Liu Y, Shan J, Rao H, Ma X, Li Y

PDB-25ho:
Cryo-EM structure of the Helicobacter pylori ferritin-I69C
Method: single particle / : Wang N, Liu Y, Shan J, Rao H, Ma X, Li Y

EMDB-55568:
Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with SecYEG (Consensus Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-55570:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with SecYEG-YidC (Consensus Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-55571:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with SecYEG-YidC (Focused Refinement)
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Kedrov A, Beckmann R

EMDB-52707:
Dark-state structure of human medium-wavelength cone opsin (OPN1MW)
Method: single particle / : Schmidt SL, Isaikina P

EMDB-55598:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

PDB-9t5x:
Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC
Method: single particle / : Rosales-Hernandez C, Busch M, Kamel M, Beckmann R, Kedrov A

EMDB-54283:
Human UAP56-RNA - SAC3D1-PCID2-SEM1 complex, Map A
Method: single particle / : Hohmann U, Graf M, Plaschka C

EMDB-54284:
Map B of the human UAP56-RNA - SAC3D1-PCID2-SEM1 complex
Method: single particle / : Hohmann U, Graf M, Plaschka C

EMDB-65634:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

PDB-9w4i:
Cryo-EM structure of Enterovirus-D68 MO strain virus-like particle
Method: single particle / : Senpuku K, Hirose M, Ito T, Kato T, Yshioka Y

EMDB-74892:
Quasibacillus thermotolerans T=4 encapsulin pore mutant variant Glass 9
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

EMDB-74904:
Quasibacillus thermotolerans T=4 encapsulin pore mutant variant Letter11
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

EMDB-74905:
Quasibacillus thermotolerans T=3 encapsulin pore mutant variant Letter11
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

PDB-9zvv:
Quasibacillus thermotolerans T=4 encapsulin pore mutant variant Glass 9
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

PDB-9zw3:
Quasibacillus thermotolerans T=4 encapsulin pore mutant variant Letter11
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

PDB-9zw4:
Quasibacillus thermotolerans T=3 encapsulin pore mutant variant Letter11
Method: single particle / : Andreas MP, Siddiquee R, Giessen TW, Lau YH

EMDB-72934:
HCoV-HKU1 C S 2P in complex with H501-008 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72935:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72936:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72937:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72938:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72939:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygn:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygo:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygp:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygq:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygr:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-70949:
Distal Ku-Polymerase lambda BRCT
Method: single particle / : Vogt A, He Y

EMDB-70957:
XRCC4-XLF Scafoold
Method: single particle / : Vogt A, He Y

EMDB-70958:
NHEJ Short-range Pol lambda complex (consensus map)
Method: single particle / : Vogt A, He Y

EMDB-70959:
Proximal Ku-LigIV catalytic domain-Pol lambda BRCT
Method: single particle / : Vogt A, He Y

EMDB-70960:
NHEJ Short-range complex with Polymerase lambda
Method: single particle / : Vogt A, He Y

EMDB-52615:
Dark-state structure of human medium-wave-sensitive cone opsin (OPN1MW)
Method: single particle / : Schmidt SL, Isaikina P

EMDB-52814:
Dark-state structure of human short-wave-sensitive opsin (OPN1SW)
Method: single particle / : Schmidt SL, Isaikina P

EMDB-53268:
Pre-active dark-state structure of human short-wave-sensitive opsin (OPN1SW)
Method: single particle / : Schmidt SL, Isaikina P

PDB-9i3t:
Dark-state structure of human medium-wave-sensitive cone opsin (OPN1MW)
Method: single particle / : Schmidt SL, Sen S, Isaikina P

PDB-9ibw:
Dark-state structure of human short-wave-sensitive opsin (OPN1SW)
Method: single particle / : Schmidt SL, Isaikina P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more