[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 860 items for (author: rigo & n)

EMDB-75660:
Capsid Subtomogram Average From NL4.3:PR(D25N) Immature HIV-1 Virions
Method: subtomogram averaging / : Preece B, Saffarian S

EMDB-66703:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66704:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66705:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66706:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66707:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66708:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbk:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbl:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbm:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbn:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbo:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbp:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-51847:
80S Ribosome Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-51848:
RuBisCo Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-53278:
The structure of the COPI leaf bound to GOLPH3
Method: subtomogram averaging / : Taylor RJ, Tagiltsev G, Ciazynska KA, Briggs JAG

PDB-9qpq:
The structure of the COPI leaf bound to GOLPH3
Method: subtomogram averaging / : Taylor RJ, Tagiltsev G, Ciazynska KA, Briggs JAG

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-72464:
Reconstruction of Candida albicans fatty acid synthase from cell slices using 2DTM
Method: single particle / : Elferich J, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72486:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (60S Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72488:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (mRNA decoding Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72489:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (Peptidyl transfer Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72490:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (tRNA translocation Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-71068:
Reconstruction of the yeast 60S ribosomal subunit from CEMOVIS sections
Method: single particle / : Elferich J, Kaminek M, Kong L, Odriozola A, Kukulski W, Zuber B, Grigorieff N

EMDB-46976:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

EMDB-46978:
donor substrate analog-bound AftB
Method: single particle / : Liu Y, Mancia F

EMDB-46998:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

EMDB-46999:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9dlf:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

PDB-9dlh:
donor substrate analog-bound AftB
Method: single particle / : Yaqi L

PDB-9dm5:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

PDB-9dm7:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9mjb:
Product-Bound mannosyltransferase PimE in complex with Fab
Method: single particle / : Liu Y, Mancia F

EMDB-44645:
Cryo-EM structure of TRPV3 K169A in nanodiscs incubated with NASPM
Method: single particle / : Zhang J, Yuan P, Maksaev G

PDB-9bku:
Cryo-EM structure of TRPV3 K169A in nanodiscs incubated with NASPM
Method: single particle / : Zhang J, Yuan P, Maksaev G

EMDB-44520:
Cryo-EM structure of Trypanosoma cruzi MscS
Method: single particle / : Zhang J, Yuan P

EMDB-44521:
Cryo-EM structure of Trypanosoma cruzi MscS in lipid nanodiscs
Method: single particle / : Zhang J, Yuan P

EMDB-44522:
Cryo-EM structure of Trypanosoma cruzi MscS C66L in nanodiscs
Method: single particle / : Zhang J, Yuan P

EMDB-44523:
Cryo-EM structure of Trypanosoma cruzi MscS G63V in lipid nanodiscs
Method: single particle / : Zhang J, Yuan P

PDB-9bgq:
Cryo-EM structure of Trypanosoma cruzi MscS
Method: single particle / : Zhang J, Yuan P

PDB-9bgs:
Cryo-EM structure of Trypanosoma cruzi MscS in lipid nanodiscs
Method: single particle / : Zhang J, Yuan P

PDB-9bgt:
Cryo-EM structure of Trypanosoma cruzi MscS C66L in nanodiscs
Method: single particle / : Zhang J, Yuan P

PDB-9bgu:
Cryo-EM structure of Trypanosoma cruzi MscS G63V in lipid nanodiscs
Method: single particle / : Zhang J, Yuan P

EMDB-42911:
Cryo-EM structure of the KCa2.2 channel in apo state
Method: single particle / : Nam YW, Zhang M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more