[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 102 items for (author: rho & sh)

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-71130:
A2AR-BRIL + ZM241385 + PGD2
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

EMDB-71131:
A2AR-BRIL in complex with ZM241385
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

PDB-9p1s:
A2AR-BRIL in complex with ZM241385 and PGD2
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

PDB-9p1t:
A2AR-BRIL in complex with ZM241385
Method: single particle / : Rao P, Rathinaswamy M, Chan M, Paredes AG, Patel C, Wranik BJ, Powell J, Eaton D, Hicks KJ, Mafi A, Hao Q

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-49235:
Recombinant A(H5N1) A/American Wigeon/South Carolina/22/000345-001/2021 (A/AW/SC/2021) clade 2.3.4.4b nanoparticle in complex with mouse monoclonal antibody NVX.73.2
Method: single particle / : Smith G, Patel A, Rehman A

EMDB-49222:
Influenza A(H5N1) Clade 2.3.4.4b in complex with head specific monoclonal antibody NVX.361.4
Method: single particle / : Patel N, Rehman A, Gale S

EMDB-70269:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio.
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

EMDB-70271:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:6 stoichiometry ratio.
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

PDB-9oa1:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio.
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

PDB-9oa2:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:6 stoichiometry ratio.
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

EMDB-60843:
GNATD focused acetyltransferase
Method: single particle / : Park JB, Rho SH

EMDB-43879:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA3.G57R
Method: single particle / : Zhang QE, Acharya P

EMDB-43880:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA3
Method: single particle / : Zhang QE, Acharya P

EMDB-43881:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA4
Method: single particle / : Zhang QE, Acharya P

PDB-9aug:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA3.G57R
Method: single particle / : Zhang QE, Acharya P

PDB-9auh:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA3
Method: single particle / : Zhang QE, Acharya P

PDB-9aui:
Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA4
Method: single particle / : Zhang QE, Acharya P

EMDB-47265:
CoREST complex bound to U2AF2
Method: single particle / : Hicks CW, Alani RM

PDB-9dwu:
CoREST complex bound to U2AF2
Method: single particle / : Hicks CW, Alani RM

EMDB-42247:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

PDB-8uh6:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

EMDB-41260:
SARS-CoV-2 BA.1 S-6P-no-RBD
Method: single particle / : Bu F, Li F, Liu B

PDB-8thf:
SARS-CoV-2 BA.1 S-6P-no-RBD
Method: single particle / : Bu F, Li F, Liu B

EMDB-18214:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18216:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18217:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused on E2-like density
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18218:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused dimeric core
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18220:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 CPH domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18221:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 DOC domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18222:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARM9 domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18223:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARIH-RBR element
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-19179:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

PDB-8q7e:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8q7h:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8rhz:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-29907:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v); consensus map with only Fab 1G01 resolved
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-29908:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), locally refined map
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-29909:
Structure of human NDS.3 Fab in complex with influenza virus neuraminidase from A/Darwin/09/2021 (H3N2)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gat:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gau:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

PDB-8gav:
Structure of human NDS.3 Fab in complex with influenza virus neuraminidase from A/Darwin/09/2021 (H3N2)
Method: single particle / : Tsybovsky Y, Lederhofer J, Kwong PD, Kanekiyo M

EMDB-41062:
CryoEM structure of an inward-facing MelBSt at a Na(+)-bound and sugar low-affinity conformation
Method: single particle / : Guan L

PDB-8t60:
CryoEM structure of an inward-facing MelBSt at a Na(+)-bound and sugar low-affinity conformation
Method: single particle / : Guan L

EMDB-18387:
FtsH1 protease from P.aeruginosa clone C in negative stain
Method: single particle / : Mawla GD, Mansour Kamal S, Cao LY, Purhonen P, Hebert H, Sauer RT, Baker TA, Romling U

EMDB-18388:
FtsH2 protease from P.aeruginosa clone C in negative stain
Method: single particle / : Mawla GD, Mansour Kamal S, Cao LY, Purhonen P, Hebert H, Sauer RT, Baker TA, Romling U

EMDB-18389:
P.aeruginosa clone C construct PaFtsH2-H1-link32 in negative stain
Method: single particle / : Mawla GD, Mansour Kamal S, Cao LY, Purhonen P, Hebert H, Sauer RT, Baker TA, Romling U

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more