[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: pisa & r)

EMDB-73699:
Structure of disulfide-crosslinked S. cerevisiae Hrd1 dimer bound to one copy of Hrd3 in MSP1D1 nanodisc
Method: single particle / : Pisa R, Rapoport TA

PDB-9z0e:
Structure of disulfide-crosslinked S. cerevisiae Hrd1 dimer bound to one copy of Hrd3 in MSP1D1 nanodisc
Method: single particle / : Pisa R, Rapoport TA

EMDB-16279:
Structure of CEACAM5 A3-B3 domain in Complex with Tusamitamab Fab
Method: single particle / : Kumar A, Bertrand T, Rapisarda C, Rak A

PDB-8bw0:
Structure of CEACAM5 A3-B3 domain in Complex with Tusamitamab Fab
Method: single particle / : Kumar A, Bertrand T, Rapisarda C, Rak A

EMDB-10631:
Helical reconstruction of AdhE from Escherichia coli in its compact conformation
Method: helical / : Fronzes R, Pony P

EMDB-10551:
Escherichia coli AdhE structure in its extended conformation
Method: single particle / : Fronzes R, Pony P

EMDB-10552:
Helical reconstruction of AdhE from Escherichia coli in its extended conformation
Method: helical / : Fronzes R, Pony P

EMDB-10555:
Escherichia coli AdhE structure in its compact conformation
Method: single particle / : Fronzes R, Pony P

PDB-6tqh:
Escherichia coli AdhE structure in its extended conformation
Method: single particle / : Fronzes R, Pony P

PDB-6tqm:
Escherichia coli AdhE structure in its compact conformation
Method: single particle / : Fronzes R, Pony P

EMDB-10218:
Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-10219:
The VgrG spike from the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6sjl:
Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6sk0:
The VgrG spike from the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-21531:
Head masked 3D refined density of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit used to build the 5-UTR IRES model
Method: single particle / : Neupane R, Pisareva V, Rodriguez CF, Pisarev A, Fernandez IS

EMDB-21529:
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
Method: single particle / : Neupane R, Pisareva V

EMDB-21530:
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Method: single particle / : Neupane R, Pisareva V

PDB-6w2s:
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
Method: single particle / : Neupane R, Pisareva V, Rodriguez CF, Pisarev A, Fernandez IS

PDB-6w2t:
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Method: single particle / : Neupane R, Pisareva V, Rodriguez CF, Pisarev A, Fernandez IS

EMDB-10225:
The Tle hydrolase bound to the TTR domain of the VgrG spike of the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6ski:
The Tle hydrolase bound to the TTR domain of the VgrG spike of the Type 6 secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0264:
Type VI membrane complex
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0265:
Type VI membrane complex
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0266:
Type VI membrane complex
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0267:
Type VI secretion membrane complex
Method: single particle / : Rapisarda C, Fronzes R

EMDB-4561:
STA of TssJLM
Method: subtomogram averaging / : Kooger R

EMDB-4562:
Subtomogram average of T6SS membrane complex TssJLM
Method: subtomogram averaging / : Kooger R, Pilhofer M

PDB-6hs7:
Type VI membrane complex
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0008:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0009:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-0010:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6giy:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6gj1:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

PDB-6gj3:
The baseplate complex from the type VI secretion system
Method: single particle / : Rapisarda C, Fronzes R

EMDB-7834:
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Method: single particle / : Pisareva VP, Pisarev AV

EMDB-7836:
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Method: single particle / : Pisareva VP, Pisarev AV

PDB-6d90:
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Method: single particle / : Pisareva VP, Pisarev AV, Fernandez IS

PDB-6d9j:
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Method: single particle / : Pisareva VP, Pisarev AV, Fernandez IS

EMDB-4069:
RadA dodecamer on ssDNA
Method: single particle / : Rapisarda C, Fronzes R

EMDB-3781:
TET12SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3788:
PYR16SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3789:
TRIP18SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-8062:
Cryo-EM structure of Nucleosome
Method: single particle / : Halic M, Zocco M

EMDB-8063:
Cryo-EM structure of Nucleosome
Method: single particle / : Halic M, Zocco M

EMDB-2640:
Negative-stain electron microscopy of the human GINS complex
Method: single particle / : Carroni M, De March M, Krastanova I, Medagli B, Taylor IK, Brick P, Amenitsch H, Patwardhan A, Onesti S

EMDB-1542:
Three-dimensional structure of Pyrococcus furiosus A1Ao ATP synthase
Method: single particle / : Vonck J, Pisa KY, Morgner N, Brutschy B, Mueller V

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more