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Showing 1 - 50 of 432 items for (author: oshima & m)

EMDB-65385:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

EMDB-65716:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

PDB-9w74:
Cryo-EM structure of the close-packed di-hexasome (CPDH)
Method: single particle / : Ho CH, Takizawa Y, Kurumizaka H

EMDB-65136:
Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-occluded E2-AlF state
Method: single particle / : Qian Y, Abe K

EMDB-65217:
Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdSer-occluded E2P-AlF state
Method: single particle / : Qian Y, Abe K

EMDB-65258:
Cryo-EM structure of a human flippase mutant ATP11C Q79A-CDC50A in the PtdSer-occluded E2-AlF state
Method: single particle / : Qian Y, Abe K

EMDB-65302:
Cryo-EM structrure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-open E2-BeF state
Method: single particle / : Qian Y, Abe K

PDB-9vkg:
Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-occluded E2-AlF state
Method: single particle / : Qian Y, Abe K

PDB-9vnt:
Cryo-EM structure of a human flippase mutant ATP11C Q79E-CDC50A in PtdSer-occluded E2P-AlF state
Method: single particle / : Qian Y, Abe K

PDB-9vq2:
Cryo-EM structure of a human flippase mutant ATP11C Q79A-CDC50A in the PtdSer-occluded E2-AlF state
Method: single particle / : Qian Y, Abe K

PDB-9vsl:
Cryo-EM structrure of a human flippase mutant ATP11C Q79E-CDC50A in PtdCho-open E2-BeF state
Method: single particle / : Qian Y, Abe K

EMDB-61242:
Cryo-EM structure of native NCP-UV-DDB complex
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61243:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61246:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-2
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61247:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-3
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61248:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

PDB-9j8w:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-63950:
Cryo-EM structure of Leminorella grimontii GatC in the presence of D-xylose
Method: single particle / : Takahashi YS, Kohga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-63951:
Cryo-EM structure of Leminorella grimontii GatC in the absence of D-xylose
Method: single particle / : Takahashi YS, Kohaga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-65098:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65099:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the transient state of dephosphorylation (E2~P)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65100:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ATP form)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65101:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ADP form)
Method: single particle / : Kanai R, Cornelius F, Vilsen B, Toyoshima C

PDB-9viy:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9viz:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the transient state of dephosphorylation (E2~P)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9vj0:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ATP form)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9vj1:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ADP form)
Method: single particle / : Kanai R, Cornelius F, Vilsen B, Toyoshima C

EMDB-60837:
Cryo-EM structure of KpFtsZ-ZapA complex
Method: helical / : Fujita J, Hibino K, Kagoshima G, Kamimura N, Kato Y, Uehara R, Namba K, Uchihashi T, Matsumura H

PDB-9isk:
Cryo-EM structure of KpFtsZ-ZapA complex
Method: helical / : Fujita J, Hibino K, Kagoshima G, Kamimura N, Kato Y, Uehara R, Namba K, Uchihashi T, Matsumura H

EMDB-61212:
Channel Rhodospin from Klebsormidium nitens (KnChR)
Method: single particle / : Wang YZ, Akasaka H, Tanaka T, Sano FK, Shihoya W, Osamu N

PDB-9j7w:
Channel Rhodospin from Klebsormidium nitens (KnChR)
Method: single particle / : Wang YZ, Akasaka H, Tanaka T, Sano FK, Shihoya W, Nureki O

EMDB-63324:
Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63325:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63326:
Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63327:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrb:
Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrc:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lrd:
Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

PDB-9lre:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-60592:
RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Hirano R, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-60593:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

PDB-9ii7:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone variant H2A.B
Method: single particle / : Akatsu M, Kujirai T, Rina H, Ehara H, Takizawa Y, Sekine S, Kurumizaka H

EMDB-38604:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38607:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38624:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-38717:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrj:
RNA polymerase II elongation complex with upstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xrm:
RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xso:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

PDB-8xvs:
RNA polymerase II elongation complex with downstream nucleosome extracted from human nuclei
Method: single particle / : Kujirai T, Kato J, Yamamoto K, Hirai S, Negishi L, Ogasawara M, Takizawa Y, Kurumizaka H

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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