[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 181 items for (author: nasta & v)

EMDB-50957:
Cryo-EM map of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

EMDB-50990:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-51103:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g1z:
Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

PDB-9g30:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g6j:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-50239:
cryoEM structure of Asgard tubulin heterodimer AtubA/B with GTP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

EMDB-50240:
cryoEM structure of Asgard tubulin heterodimer AtubA/B with GDP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

EMDB-50241:
cryoEM structure of Asgard tubulin heterodimer AtubA/B2 with GTP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

EMDB-52463:
CryoEM structure of Asgard AtubA/B2 microtubule
Method: helical / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52465:
CryoEM structure of Asgard AtubA/B microtubule
Method: single particle / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52466:
Cryo-tomogram of Asgard AtubA/B microtubule
Method: electron tomography / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52467:
Cryo-tomogram of Asgard AtubA/B2 microtubule
Method: electron tomography / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52469:
Sub-tomogram average of Asgard AtubA/B microtubule
Method: subtomogram averaging / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52470:
Sub-tomogram average of Asgard AtubA/B2 microtubule
Method: subtomogram averaging / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52471:
Cryo-tomogram of Ca. L. ossiferum
Method: electron tomography / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52472:
Cryo-tomogram of Ca. L. ossiferum
Method: electron tomography / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-52473:
Cryo-tomogram of Ca. L. ossiferum
Method: electron tomography / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

PDB-9f6t:
cryoEM structure of Asgard tubulin heterodimer AtubA/B with GTP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

PDB-9f6u:
cryoEM structure of Asgard tubulin heterodimer AtubA/B with GDP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

PDB-9f6v:
cryoEM structure of Asgard tubulin heterodimer AtubA/B2 with GTP
Method: single particle / : Wollweber F, Xu J, Ponce-Toled RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Schleper C, Pilhofer M

PDB-9hxc:
CryoEM structure of Asgard AtubA/B2 microtubule
Method: helical / : Wollweber F, Xu J, Ponce-Toledo RI, Rodrigues-Oliveira T, Malit JJL, Kokhanovska A, Wieczorek M, Schleper C, Pilhofer M

EMDB-51726:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51730:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51733:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51734:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51735:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51736:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51737:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gz6:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzp:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzs:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzt:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzw:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzx:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzy:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-50064:
Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50066:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50112:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-50176:
Poliovirus type 1 (strain Mahoney) stabilised virus-like particle (PV1 SC6b) in complex with GPP3 and GSH.
Method: single particle / : Bahar MW, Nasta V, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50189:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a mammalian expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-50199:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from an insect cell expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9eyy:
Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9ez0:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9f0k:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9f3q:
Poliovirus type 1 (strain Mahoney) stabilised virus-like particle (PV1 SC6b) in complex with GPP3 and GSH.
Method: single particle / : Bahar MW, Nasta V, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9f59:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a mammalian expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9f5p:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from an insect cell expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-47111:
cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder
Method: single particle / : Zhu J, Pagarigan B

PDB-9dqd:
cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder
Method: single particle / : Zhu J, Pagarigan B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more