[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 109 items for (author: nandi & p)

EMDB-59026:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

PDB-32nj:
Cryo-EM structure of SKM-M.smegmatis 70S ribosomal complex
Method: single particle / : Cook MA, Xu M, Morici M, Travin DT, Wang W, Klepacki D, Nandini N, Rao VN, Sahile H, Hackenberger D, Golas AJ, Nietupski RM, Fitzgerald M, Safdari HA, Berger M, Corazza M, Bond A, Ben-Zion I, Guitor AK, Tertigas D, Wang L, Schaenzer AJ, Ejim L, Yarlagadda V, Gomez J, Surette MG, Av-Gay Y, Dhar N, Hung DT, Vazquez Laslop N, Mankin A, Wilson DN, Wright GD

EMDB-70806:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osg:
The partially ruptured LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

EMDB-70805:
The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

EMDB-70807:
The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osf:
The intact LBD state of GluK2/K5 with 5-iodowillardiine and kynurenic acid sodium salt
Method: single particle / : Khanra NK, Meyerson JR

PDB-9osi:
The intact LBD state of GluK2/K5 with alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
Method: single particle / : Khanra NK, Meyerson JR

EMDB-75144:
30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI
Method: single particle / : Barmada MI, Nandi S, Conn GL

PDB-10fz:
30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI
Method: single particle / : Barmada MI, Nandi S, Conn GL

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-72368:
Trm10-tRNA complex (closed conformation)
Method: single particle / : Nandi S, Strassler SE, Conn GL

EMDB-72369:
Trm10-tRNA complex (open conformation)
Method: single particle / : Nandi S, Strassler SE, Conn GL

EMDB-72370:
Trm10-tRNA complex (Two Trm10 monomers bound to one tRNA)
Method: single particle / : Nandi S, Strassler SE, Conn GL

PDB-9xzq:
Trm10-tRNA complex (closed conformation)
Method: single particle / : Nandi S, Strassler SE, Conn GL

PDB-9xzr:
Trm10-tRNA complex (open conformation)
Method: single particle / : Nandi S, Strassler SE, Conn GL

PDB-9xzs:
Trm10-tRNA complex (Two Trm10 monomers bound to one tRNA)
Method: single particle / : Nandi S, Strassler SE, Conn GL

EMDB-70458:
Cryo-EM structure of human full-length XPO1 (unliganded)
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70459:
Cryo-EM structure of human full-length XPO1 conjugated with selinexor
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70460:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to yeast RAN-GTP and human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70461:
Cryo-EM structure of human exportin-1 conjugated with KPT-185 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70462:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to human ASB8(R197A)-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70463:
Cryo-EM structure of human exportin-1 conjugated with KPT-127 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-70464:
Cryo-EM structure of human exportin-1 conjugated with KPT-UTSW1 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9og9:
Cryo-EM structure of human full-length XPO1 (unliganded)
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9oga:
Cryo-EM structure of human full-length XPO1 conjugated with selinexor
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9ogb:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to yeast RAN-GTP and human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9ogc:
Cryo-EM structure of human exportin-1 conjugated with KPT-185 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9ogd:
Cryo-EM structure of human exportin-1 conjugated with selinexor and bound to human ASB8(R197A)-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9oge:
Cryo-EM structure of human exportin-1 conjugated with KPT-127 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-9ogf:
Cryo-EM structure of human exportin-1 conjugated with KPT-UTSW1 and bound to human ASB8-ELOB/C
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-72071:
Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit
Method: single particle / : Barmada MI, Conn GL

PDB-9pzg:
Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit
Method: single particle / : Barmada MI, Conn GL

EMDB-47363:
M. smegmatis unmethylated 70S ribosome structure
Method: single particle / : Nandi S, Conn GL

EMDB-47365:
M. smegmatis methylated 70S ribosome structure
Method: single particle / : Nandi S, Conn GL

PDB-9e0n:
M. smegmatis unmethylated 70S ribosome structure
Method: single particle / : Nandi S, Conn GL

PDB-9e0p:
M. smegmatis methylated 70S ribosome structure
Method: single particle / : Nandi S, Conn GL

EMDB-49728:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

PDB-9nrc:
TMPRSS6 in complex with REGN7999 Fab and REGN8023 Fab
Method: single particle / : Saotome K, Franklin MC

EMDB-48216:
Structure of the human TWIK-2 potassium channel
Method: single particle / : Khanra NK, Long SB

EMDB-48217:
Structure of the human TWIK-2 potassium channel in complex with pimozide
Method: single particle / : Khanra NK, Long SB

PDB-9mek:
Structure of the human TWIK-2 potassium channel
Method: single particle / : Khanra NK, Long SB

PDB-9mel:
Structure of the human TWIK-2 potassium channel in complex with pimozide
Method: single particle / : Khanra NK, Long SB

EMDB-47526:
Cryo-EM structure of Burkholderia cenocepacia orotate phosphoribosyltransferase
Method: single particle / : Sharma N, French JB

PDB-9e5g:
Cryo-EM structure of Burkholderia cenocepacia orotate phosphoribosyltransferase
Method: single particle / : Sharma N, French JB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more