[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 429 items for (author: miller & as)

EMDB-52913:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53011:
Focused refinement map of CHSY3-CHPF complex: N-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53012:
Focused refinement map of CHSY3-CHPF complex: C-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53018:
Consensus map of CHSY3-CHPF complex
Method: single particle / : Dutta P, Cordeiro RL, Wild R

PDB-9q8z:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz3:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz4:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

PDB-9nz5:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-47927:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

EMDB-47931:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

PDB-9ecv:
CryoEM Structure Of Respiratory Syncytial Virus Polymerase in complex with Novel Non-Nucleoside Inhibitor Compound 16
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney C

PDB-9ed2:
CryoEM map of Respiratory Syncytial Virus Polymerase with Non-Nucleoside Inhibitor compound 21
Method: single particle / : Yin Y, Tran MT, Yu X, Jonckers T, Carney S

EMDB-46727:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

PDB-9dbx:
Structure of AG11-2F01 Fab in complex with A/Solomon Islands/3/2006 (H1N1) influenza virus hemagglutinin
Method: single particle / : Mou Z, Lei R, Dai X, Wu N

EMDB-45930:
Structure of 16.ND.92 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus Hemagglutinin
Method: single particle / : Ouyang WO, Pholcharee T, Wu NC

PDB-9cu7:
Structure of 16.ND.92 Fab in complex with A/Solomon Islands/3/2006(H1N1) influenza virus Hemagglutinin
Method: single particle / : Ouyang WO, Pholcharee T, Wu NC

PDB-9i3i:
Cryo-EM structure of the MCM-ORC (MO) complex featuring an ORC2 regulatory domain involved in cell cycle regulation of MCM-DH loading for DNA replication.
Method: single particle / : Miller TCR, Lim CT, Diffley JFX, Costa A

EMDB-48846:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

PDB-9n36:
CryoEM structure Of Respiratory Syncytial Virus Polymerase with novel non-nucleoside inhibitor compound 22
Method: single particle / : Yin Y, Yu X, Kalin JH, Tran MT, Sharma S

EMDB-45157:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-45158:
SARS-CoV-2 Nucleocapsid dimer complexed to 24 bp RNA
Method: single particle / : Landeras-Bueno S, Ollmann-Saphire E

PDB-9c2h:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-48263:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-48288:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

EMDB-48289:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mgy:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mie:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

PDB-9mig:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-43745:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

PDB-8w2e:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

EMDB-19186:
Cryo-EM structure of the MCM double hexamer loaded onto dsDNA.
Method: single particle / : Miller TCR, Lim CT, Diffley JFX, Costa A

EMDB-19187:
Cryo-EM structure of an MCM helicase single hexamer loaded onto dsDNA.
Method: single particle / : Miller TCR, Lim CT, Diffley JFX, Costa A

PDB-8rif:
Cryo-EM structure of the MCM double hexamer loaded onto dsDNA.
Method: single particle / : Miller TCR, Lim CT, Diffley JFX, Costa A

PDB-8rig:
Cryo-EM structure of an MCM helicase single hexamer loaded onto dsDNA.
Method: single particle / : Miller TCR, Lim CT, Diffley JFX, Costa A

EMDB-46855:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

PDB-9dh3:
Cryo-EM structure of NLRP3 complex with Compound C
Method: single particle / : Matico R, Grauwen K, Van Gool M, Muratore EM, Yu X, Abdiaj I, Adhikary S, Adriaensen I, Aranzazu GM, Alcazar J, Bassi M, Brisse E, Canellas S, Chaudhuri S, Chauhan D, Delgado F, Dieguez-Vazquez A, Du Jardin M, Eastham V, Finley M, Jacobs T, Keustermans K, Kuhn R, Llaveria J, Leenaerts J, Linares ML, Martin ML, Martinez C, Miller R, Munoz FM, Nooyens A, Perez LB, Perrier M, Pietrak B, Serre J, Sharma S, Somers M, Suarez J, Tresadern G, Trabanco AA, Van den Bulck D, Van Hauwermeiren F, Varghese T, Vega JA, Youssef SA, Edwards MJ, Oehlrich D, Van Opdenbosch N

EMDB-45402:
Bat SARS-like Coronavirus RsSHC014 Spike Protein
Method: single particle / : Acreman CM, McLellan JS

PDB-9cas:
Bat SARS-like Coronavirus RsSHC014 Spike Protein
Method: single particle / : Acreman CM, McLellan JS

EMDB-46644:
Cryo-EM structure of a trapped ARIH1-diUB-CRL2-KLHDC10 complex - consensus map
Method: single particle / : Chittori S, Scott DC, Schulman BA

EMDB-46645:
Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C
Method: single particle / : Chittori S, Scott DC, Schulman BA

PDB-9d8p:
Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C
Method: single particle / : Chittori S, Scott DC, Schulman BA

EMDB-43092:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43093:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vah:
E.coli PNPase in complex with single 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

PDB-8vak:
E.coli PNPase in complex with double 8-oxoG RNA
Method: single particle / : Kim W, Zhang YJ

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more