[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 161 items for (author: masahiro & i)

EMDB-62378:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62379:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62380:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62381:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-62382:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjx:
Cryo-EM structure of the Retron-Eco7 complex (state 1)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjy:
Cryo-EM structure of the Retron-Eco7 complex (state 2)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kjz:
Cryo-EM structure of the Retron-Eco7 complex (state 3)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk1:
Cryo-EM structure of the Retron-Eco7 complex (state 4)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

PDB-9kk2:
Cryo-EM structure of the Retron-Eco7 complex (state 5)
Method: single particle / : Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H

EMDB-60617:
Tubular PuuE complex with C4 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60618:
Tubular PuuE complex with C5 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60619:
Tubular PuuE complex with C6 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60620:
Tubular PuuE D-loop complex with C3 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60621:
Tubular PuuE D-loop complex with C4 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60622:
Tubular PuuE D-loop complex with C5 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-60623:
Tubular PuuE D-loop complex with C6 symmetry
Method: helical / : Noji M, Sugita Y, Suzuki Y

EMDB-47820:
Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

EMDB-70295:
Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

PDB-9e9x:
Cryo-EM structure of alpha-synuclein filaments derived from the temporal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

PDB-9obp:
Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy
Method: helical / : Enomoto M, Martinez-Valbuena I, Forrest SL, Xu X, Munhoz R, Li J, Rogaeva E, Lang AE, Kovacs GG

EMDB-39003:
TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
Method: single particle / : Kugawa M, Kawakami K, Kise R, Kobayashi K, Kojima A, Inoue W, Fukuda M, Inoue A, Kato HE

EMDB-39004:
GLPG0974-bound human FFA2
Method: single particle / : Kugawa M, Kawakami K, Kise R, Kobayashi K, Kojima A, Inoue W, Fukuda M, Inoue A, Kato HE

PDB-8y6w:
TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
Method: single particle / : Kugawa M, Kawakami K, Kise R, Kobayashi K, Kojima A, Inoue W, Fukuda M, Inoue A, Kato HE

PDB-8y6y:
GLPG0974-bound human FFA2
Method: single particle / : Kugawa M, Kawakami K, Kise R, Kobayashi K, Kojima A, Inoue W, Fukuda M, Inoue A, Kato HE

EMDB-61058:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61059:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61060:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0n:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0o:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0p:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-39081:
Structure of the Ebola virus nucleocapsid subunit
Method: single particle / : Fujita-Fujiharu Y, Hu S, Hirabayashi A, Takamatsu Y, Ng Y, Houri K, Muramoto Y, Nakano M, Sugita Y, Noda T

PDB-8y9j:
Structure of the Ebola virus nucleocapsid subunit
Method: single particle / : Fujita-Fujiharu Y, Hu S, Hirabayashi A, Takamatsu Y, Ng Y, Houri K, Muramoto Y, Nakano M, Sugita Y, Noda T

EMDB-38877:
Cryo-EM structure of the overlapping di-nucleosome (closed form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38878:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38879:
Cryo-EM structure of the overlapping di-nucleosome (open form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-38880:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3c:
Cryo-EM structure of the overlapping di-nucleosome (closed form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3d:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3e:
Cryo-EM structure of the overlapping di-nucleosome (open form)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

PDB-8y3f:
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Method: single particle / : Tanaka H, Nishimura M, Takizawa Y, Nozawa K, Ehara H, Sekine S, Kurumizaka H

EMDB-39482:
mouse proteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

EMDB-39565:
canine immunoproteasome 20S subunit in complex with compound 2
Method: single particle / : Kashima A, Arai Y

EMDB-39600:
canine immunoproteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

EMDB-39612:
canine immunoproteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

PDB-8ypk:
mouse proteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

PDB-8ysx:
canine immunoproteasome 20S subunit in complex with compound 2
Method: single particle / : Kashima A, Arai Y

PDB-8yvg:
canine immunoproteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

PDB-8yvp:
canine immunoproteasome 20S subunit in complex with compound 1
Method: single particle / : Kashima A, Arai Y

EMDB-37827:
Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA in the pre-strand exchange state
Method: single particle / : Hiraizumi M, Yamashita K, Nishimasu H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more