[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for (author: mahi & ma)

EMDB-62302:
Cryo-EM Density map of Staphylococcus aureus alpha-hemolysin pore structure derived from 12:0 Phosphatidylcholine (12:0 PC) liposome
Method: single particle / : Chatterjee A, Dutta S, Roy A

EMDB-62303:
Structure of Alpha-hemolysin heptameric pore state derived from Egg-PC/SM liposomes.
Method: single particle / : Chatterjee A, Roy A, Dutta S

EMDB-62304:
Alpha-hemolysin heptameric late pre-pore state derived from 10:0 PC/Sphingomyelin liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

EMDB-62305:
Alpha-hemolysin heptameric pre-pore state derived from 10:0 PC liposomes.
Method: single particle / : Chatterjee A, Roy A, Dutta S

EMDB-62307:
Alpha-hemolysin heptameric pore state derived from egg PC/Cholesterol (3:1 molar ratio) liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

EMDB-62308:
Map of EggPC/SM derived prepore structure of alpha-hemolysin
Method: single particle / : Chatterjee A, Dutta S, Roy A

EMDB-62309:
12:0 PC liposome derived pre-pore structure of alpha hemolysin
Method: single particle / : Chatterjee A, Dutta S, Roy A

EMDB-62310:
Alpha-hemolysin heptameric pore state derived from 10:0 PC liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kg0:
Alpha-hemolysin heptameric late pre-pore state derived from 10:0 PC/Sphingomyelin liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kg1:
Alpha-hemolysin heptameric pre-pore state derived from 10:0 PC liposomes.
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kg3:
Alpha-hemolysin heptameric pore state derived from egg PC/Cholesterol (3:1 molar ratio) liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kg6:
Alpha-hemolysin heptameric pore state derived from 10:0 PC liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kre:
Alpha-hemolysin heptameric POPC bound pore state derived from egg PC/Cholesterol (3:1 molar ratio) liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9krf:
Alpha-hemolysin heptameric pore state bound to 10:0 PC lipid chains derived from 10:0 PC liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9ktm:
Alpha-hemolysin heptameric pre-pore state bound to 10:PC lipid chains derived from 10:0 PC liposomes.
Method: single particle / : Chatterjee A, Roy A, Dutta S

PDB-9kto:
Alpha-hemolysin heptameric late pre-pore state with bound lipids derived from 10:0 PC/Sphingomyelin liposomes
Method: single particle / : Chatterjee A, Roy A, Dutta S

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-48263:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-48288:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

EMDB-48289:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mgy:
Cryo-EM structure of Human NLRP3 complex with compound 1
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

PDB-9mie:
Human NLRP3 complex with compound 2 in the closed hexamer
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X

PDB-9mig:
Cryo-EM structure of Human NLRP3 complex with compound 3
Method: single particle / : Mammoliti O, Carbajo RJ, Perez-Benito L, Yu X, Prieri MLC, Bontempi L, Embrechts S, Paesmans I, Bassi M, Bhattacharya A, Roman SC, Hoog SD, Demin S, Gijsen HJM, Hache G, Jacobs T, Jerhaoui S, Leenaerts J, Lutter FH, Matico R, Oehlrich D, Perrier M, Ryabchuk P, Schepens W, Sharma S, Somers M, Suarez J, Surkyn M, Opdenbosch NV, Verhulst T, Bottelbergs A

EMDB-45359:
Assimilatory NADPH-dependent sulfite reductase minimal dimer
Method: single particle / : Ghazi Esfahani B, Walia N, Neselu K, Aragon M, Askenasy I, Wei A, Mendez JH, Stroupe ME

PDB-9c91:
Assimilatory NADPH-dependent sulfite reductase minimal dimer
Method: single particle / : Ghazi Esfahani B, Walia N, Neselu K, Aragon M, Askenasy I, Wei A, Mendez JH, Stroupe ME

EMDB-45207:
AP-3 bound to myristoylated Arf1 (Q71L)
Method: single particle / : Begley MC, Baker RW

EMDB-45208:
Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc
Method: single particle / : Begley MC, Baker RW

EMDB-45209:
AP-3 Arf1 dimeric interface, focused refinement
Method: single particle / : Begley MC, Baker RW

EMDB-45210:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; concensus refinement
Method: single particle / : Baker RW, Begley M

EMDB-45211:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; focus refinement 1
Method: single particle / : Baker RW, Begley M

EMDB-45212:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; focus refinement 2
Method: single particle / : Baker RW, Begley M

EMDB-45213:
AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map
Method: single particle / : Begley MC, Baker RW

EMDB-45214:
Structure of Human Adaptor Protein Complex AP-3 in the Apo State
Method: single particle / : Begley MC, Baker RW

PDB-9c58:
AP-3 bound to myristoylated Arf1 (Q71L)
Method: single particle / : Begley MC, Baker RW

PDB-9c59:
Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc
Method: single particle / : Begley MC, Baker RW

PDB-9c5a:
AP-3 Arf1 dimeric interface, focused refinement
Method: single particle / : Begley MC, Baker RW

PDB-9c5b:
AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map
Method: single particle / : Begley MC, Baker RW

PDB-9c5c:
Structure of Human Adaptor Protein Complex AP-3 in the Apo State
Method: single particle / : Begley MC, Baker RW

EMDB-43119:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

PDB-8vbb:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

EMDB-35068:
Cryo-EM map of MsDps2-DNA Complex
Method: single particle / : Garg P, Dutta S

EMDB-35069:
Cryo-EM structure of delta N15 MsDps2 of Mycobacterium smegmatis
Method: single particle / : Garg P, Dutta S

EMDB-35070:
Cryo-EM structure of MsDps2 from Mycobacterium smegmatis
Method: single particle / : Garg P, Dutta S

EMDB-35071:
Focused cryo-EM map of MsDps2 from MsDps2-DNA complex of Mycobacterium smegmatis
Method: single particle / : Dutta S, Garg P

EMDB-35072:
Cryo-EM map of MsDps2-DNA Complex
Method: single particle / : Garg P, Dutta S

EMDB-35073:
Cryo-EM map of delta N15 MsDps2-DNA complex
Method: single particle / : Garg P, Dutta S

PDB-8hwz:
Cryo-EM structure of delta N15 MsDps2 of Mycobacterium smegmatis
Method: single particle / : Garg P, Dutta S

PDB-8hx0:
Cryo-EM structure of MsDps2 from Mycobacterium smegmatis
Method: single particle / : Garg P, Dutta S

PDB-8hx1:
Focused cryo-EM map of MsDps2 from MsDps2-DNA complex of Mycobacterium smegmatis
Method: single particle / : Dutta S, Garg P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more