[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 854 items for (author: kumar & p)

EMDB-42636:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

PDB-8uw1:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

EMDB-43118:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1C08
Method: single particle / : Berndsen ZT, Ward AB

EMDB-43119:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

EMDB-44765:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-44766:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bp9:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bpa:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-43128:
Structure of the human dopamine transporter in complex with beta-CFT, MRS7292 and divalent zinc
Method: single particle / : Srivastava DK, Gouaux E

PDB-8vby:
Structure of the human dopamine transporter in complex with beta-CFT, MRS7292 and divalent zinc
Method: single particle / : Srivastava DK, Gouaux E

EMDB-43139:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

PDB-8vcr:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

EMDB-41578:
mGluR3 class 1 in the presence of the antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-45242:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326 class 2
Method: single particle / : Strauss A, Levitz J

PDB-8trd:
mGluR3 class 1 in the presence of the antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-36488:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37212:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Receptor original map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-37214:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Ligand/CCL7 focused map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

PDB-8jps:
Structure of Duffy Antigen Receptor for Chemokines (DARC)/ACKR1 in complex with the chemokine, CCL7 (Composite map)
Method: single particle / : Banerjee R, Khanppnavar B, Maharana J, Saha S, Korkhov VM, Shukla AK

EMDB-50353:
ss-dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

EMDB-50355:
dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

PDB-9ffb:
ss-dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

PDB-9fff:
dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

EMDB-43746:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

PDB-8w2f:
Plasmodium falciparum 20S proteasome bound to an inhibitor
Method: single particle / : Han Y, Deng X, Ray S, Chen Z, Phillips M

EMDB-41501:
mGluR3 in the presence of the agonist LY379268 and PAM VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-41567:
Metabotropic glutamate receptor 3 class 3 bound to antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-41568:
mGluR3 in the presence of the agonist LY379268
Method: single particle / : Strauss A, Levitz J

EMDB-41577:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-44861:
metabotropic glutamate receptor subtype three bound to the antagonist LY 341495, class two
Method: single particle / : Strauss A, Levitz J

PDB-8tqb:
mGluR3 in the presence of the agonist LY379268 and PAM VU6023326
Method: single particle / : Strauss A, Levitz J

PDB-8tr0:
Metabotropic glutamate receptor 3 class 3 bound to antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

PDB-8tr2:
mGluR3 in the presence of the agonist LY379268
Method: single particle / : Strauss A, Levitz J

PDB-8trc:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-19978:
Outward-open structure of Drosophila dopamine transporter bound to an atypical non-competitive inhibitor
Method: single particle / : Pedersen CN, Yang F, Ita S, Xu Y, Akunuri R, Trampari S, Neumann CMT, Desdorf LM, Schioett B, Salvino JM, Mortensen OV, Nissen P, Shahsavar A

EMDB-19979:
Inhibitor-free outward-open structure of Drosophila dopamine transporter
Method: single particle / : Pedersen CN, Yang F, Ita S, Xu Y, Akunuri R, Trampari S, Neumann CMT, Desdorf LM, Schioett B, Salvino JM, Mortensen OV, Nissen P, Shahsavar A

PDB-9euo:
Outward-open structure of Drosophila dopamine transporter bound to an atypical non-competitive inhibitor
Method: single particle / : Pedersen CN, Yang F, Ita S, Xu Y, Akunuri R, Trampari S, Neumann CMT, Desdorf LM, Schioett B, Salvino JM, Mortensen OV, Nissen P, Shahsavar A

PDB-9eup:
Inhibitor-free outward-open structure of Drosophila dopamine transporter
Method: single particle / : Pedersen CN, Yang F, Ita S, Xu Y, Akunuri R, Trampari S, Neumann CMT, Desdorf LM, Schioett B, Salvino JM, Mortensen OV, Nissen P, Shahsavar A

EMDB-44635:
Inactive mu opioid receptor bound to Nb6, naloxone and NAM
Method: single particle / : O'Brien ES, Wang H, Kaavya Krishna K, Zhang C, Kobilka BK

PDB-9bjk:
Inactive mu opioid receptor bound to Nb6, naloxone and NAM
Method: single particle / : O'Brien ES, Wang H, Kaavya Krishna K, Zhang C, Kobilka BK

EMDB-45655:
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin
Method: single particle / : Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG

EMDB-37546:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

EMDB-37548:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

EMDB-37549:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

EMDB-37550:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

EMDB-38049:
SARS-CoV-2 JN.1 Spike
Method: single particle / : Yue C, Liu P

EMDB-38072:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

EMDB-38073:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

EMDB-38681:
BA.2.86 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

EMDB-38682:
JN.1 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more