[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,334 items for (author: kumar & p)

EMDB-76879:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA)
Method: subtomogram averaging / : Park D

EMDB-76880:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (delSagA-complemented)
Method: subtomogram averaging / : Park D

EMDB-76881:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (vancomycin treated)
Method: subtomogram averaging / : Park D

EMDB-76882:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (pghi-4 treated)
Method: subtomogram averaging / : Park D

EMDB-76883:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (vancomycin + pghi-4 treated)
Method: subtomogram averaging / : Park D

EMDB-76884:
Subtomogram averaging of vancomycin-resistant Enterococcus faecium (wt)
Method: subtomogram averaging / : Park D

PDB-9nz0:
Cryo-EM structure of vaccine elicited antibody 22F5 bound to the post-fusion conformation of the LayV-F glycoprotein
Method: single particle / : Kumar U, May A, Acharya P

EMDB-74618:
cryoEM structure of hexametric HtrA from Borrelia burgdorferi with bound peptides in the active sites
Method: single particle / : Shakya AK, Herzberg O

PDB-9zrj:
cryoEM structure of hexametric HtrA from Borrelia burgdorferi with bound peptides in the active sites
Method: single particle / : Shakya AK, Herzberg O

EMDB-48715:
Cryo-EM map of vaccine elicited antibody 22F5 bound to post-fusion conformation of Langya virus F protein
Method: single particle / : Kumar U, Acharya P

EMDB-49948:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

PDB-9nz2:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

EMDB-73226:
HBV wildtype capsid with packaged E. coli RNA
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73227:
Focused map of HBV with BAY41-4109
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73229:
Focused map of HBV Capsid with compound HAP12
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-66202:
Cryo-EM structure of SARS CoV2 S protein with stabilising mutations
Method: single particle / : Srivastava S, Mishra S, Dutta S, Varadarajan R

PDB-9wsp:
Cryo-EM structure of SARS CoV2 S protein with stabilising mutations
Method: single particle / : Srivastava S, Mishra S, Dutta S, Varadarajan R

PDB-9skg:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its reduced (red) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjx:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its oxidised (met) form (re-oxidised)
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjy:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its oxidised (met) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sk1:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its reduced (red) form
Method: electron crystallography / : Pacoste L, Kumar R, Srinivas V, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjw:
Serial electron diffraction (SerialED) structure of Y122F mutant Ribonucleotide reductase R2 from E. coli in its oxidised (met) form
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

PDB-9sjz:
Serial electron diffraction (SerialED) structure of Ribonucleotide reductase R2 from E. coli in its oxidised (met) form (re-oxidised)
Method: electron crystallography / : Pacoste L, Kumar R, Hongyi X, Hofer G, Hogbom M, Zou X

EMDB-73268:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73283:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

EMDB-73288:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73362:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73367:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

EMDB-73368:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

PDB-9yop:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yp4:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

PDB-9yp9:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH docked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yr7:
Cryo-EM structure of human beta-cardiac myosin bound to mavacamten in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yrg:
Cryo-EM structure of human beta-cardiac myosin in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Ge J, Yengo CM, Craig R, Padron R

PDB-9yrh:
Cryo-EM structure of human beta-cardiac myosin bound to omecamtiv mecarbil in the interacting-heads motif and S2-FH undocked state
Method: single particle / : Somavarapu AK, Craig R, Padron R

EMDB-54006:
Population B fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-54007:
Population A fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

PDB-9riv:
Population B fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

PDB-9riw:
Population A fibril generated from the Heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-56480:
Medin fibril generated from the heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Zorzini V, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

PDB-9u02:
Medin fibril generated from the heterotypic interaction of Abeta40 and Medin.
Method: helical / : Pradhan B, Kumar ST, Wagner J, Gallardo R, Zorzini V, Orlando G, Vleeschouwer MD, Madine J, Louros N, Neher J, Schymkowitz J, Rousseau F

EMDB-49397:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in Apo state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9ngz:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in Apo state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-49347:
cryo-EM structure of Serendipita indica sulfate transporter SiSulT in sulphate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9nf7:
cryo-EM structure of Serendipita indica sulfate transporter SiSulT in sulphate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-49571:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in oxlate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

PDB-9nnc:
Cryo-EM structure of Serendipita indica sulfate transporter SiSulT in oxlate bound state
Method: single particle / : Khandelwal NK, Kumar P, Gupta M, Finer-Moore J, Stroud RM

EMDB-70100:
Cryo-EM structure of the CHSY3-CHPF1 chondroitin synthase heterodimer
Method: single particle / : Tehrani D, Cortiella N, Perez C, Moremen K

PDB-9o4g:
Cryo-EM structure of the CHSY3-CHPF1 chondroitin synthase heterodimer
Method: single particle / : Tehrani D, Cortiella N, Perez C, Moremen K

EMDB-66199:
Cryo-EM structure of Sigma28-RNAP open promoter complex from Pseudomonas aeruginosa
Method: single particle / : Nln S, Kumar V, Sahoo PK, Kandiah E, Jain D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more