[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 55 items for (author: kloss & b)

EMDB-43735:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

PDB-8w1z:
Structure of a LGR dimer from Caenorhabditis elegans in apo state
Method: single particle / : Gong Z, Hendrickson WA

EMDB-49896:
Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Method: single particle / : Zinkle AP, Bunuro-Batista M, Herrera CM, Erramilli SK, Kloss B, Ashraf KU, Nosol K, Zhang G, Cater RJ, Marty MT, Kossiakoff AA, Trent MS, Nygaard R, Stansfeld PJ, Mancia F

PDB-9nww:
Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Method: single particle / : Zinkle AP, Bunuro-Batista M, Herrera CM, Erramilli SK, Kloss B, Ashraf KU, Nosol K, Zhang G, Cater RJ, Marty MT, Kossiakoff AA, Trent MS, Nygaard R, Stansfeld PJ, Mancia F

EMDB-46976:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

EMDB-46978:
donor substrate analog-bound AftB
Method: single particle / : Liu Y, Mancia F

EMDB-46998:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

EMDB-46999:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9dlf:
Arabinosyltransferase AftB in complex with Fab_B3
Method: single particle / : Liu Y, Mancia F

PDB-9dlh:
donor substrate analog-bound AftB
Method: single particle / : Yaqi L

PDB-9dm5:
Product-Bound mannosyltransferase PimE
Method: single particle / : Liu Y

PDB-9dm7:
mannosyltransferase PimE in complex with Fab_E6
Method: single particle / : Liu Y

PDB-9mjb:
Product-Bound mannosyltransferase PimE in complex with Fab
Method: single particle / : Liu Y, Mancia F

EMDB-44502:
Cryo-EM structure of Sevenless extracellular domain (monomer)
Method: single particle / : Cerutti G, Shapiro L

EMDB-44503:
Cryo-EM structure of Sevenless in complex with Bride of Sevenless
Method: single particle / : Cerutti G, Shapiro L

EMDB-44504:
Cryo-EM structure of Bride of Sevenless extracellular domain (dimer, Sevenless-bound form)
Method: single particle / : Cerutti G, Shapiro L

EMDB-44505:
Cryo-EM structure of Sevenless extracellular domain (dimer, pH 6.6)
Method: single particle / : Cerutti G, Shapiro L

EMDB-44507:
Cryo-EM structure of Sevenless extracellular domain (composite map of the dimer, pH 4.6)
Method: single particle / : Cerutti G, Shapiro L

PDB-9bfp:
Cryo-EM structure of Sevenless extracellular domain (monomer)
Method: single particle / : Cerutti G, Shapiro L

PDB-9bfq:
Cryo-EM structure of Sevenless in complex with Bride of Sevenless
Method: single particle / : Cerutti G, Shapiro L

PDB-9bfr:
Cryo-EM structure of Bride of Sevenless extracellular domain (dimer, Sevenless-bound form)
Method: single particle / : Cerutti G, Shapiro L

PDB-9bfs:
Cryo-EM structure of Sevenless extracellular domain (dimer, pH 6.6)
Method: single particle / : Cerutti G, Shapiro L

PDB-9bfu:
Cryo-EM structure of Sevenless extracellular domain (composite map of the dimer, pH 4.6)
Method: single particle / : Cerutti G, Shapiro L

EMDB-42067:
Non-uniform refinement map used for local refinement of transmembrane region
Method: single particle / : Nygaard R, Mancia F

EMDB-42068:
Non-uniform map used for local refinement of periplasmic domain
Method: single particle / : Nygaard R, Mancia F

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzn:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzo:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-41299:
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex
Method: single particle / : Nygaard R, Mancia F

EMDB-41303:
Transmembrane map
Method: single particle / : Nygaard R, Mancia F

EMDB-41304:
Periplasmic map
Method: single particle / : Nygaard R, Mancia F

PDB-8tj3:
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex
Method: single particle / : Nygaard R, Mancia F

EMDB-26054:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its ligand bound state
Method: single particle / : Ashraf KU, Nygaard R

EMDB-26057:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state
Method: single particle / : Ashraf KU, Nygaard R

PDB-7tpg:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its ligand bound state
Method: single particle / : Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper D, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

PDB-7tpj:
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state
Method: single particle / : Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper D, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

EMDB-25143:
Structure of positive allosteric modulator-bound active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

EMDB-25144:
Structure of positive allosteric modulator-free active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

EMDB-25145:
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor
Method: single particle / : Park J, Zuo H

PDB-7sil:
Structure of positive allosteric modulator-bound active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

PDB-7sim:
Structure of positive allosteric modulator-free active human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

PDB-7sin:
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor
Method: single particle / : Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR

EMDB-23883:
Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Method: single particle / : Cater RJ, Chua GL

PDB-7mjs:
Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3
Method: single particle / : Cater RJ, Chua GL, Erramilli SK, Keener JE, Choy BC, Tokarz P, Chin CF, Quek DQY, Kloss B, Pepe JG, Parisi G, Wong BH, Clarke OB, Marty MT, Kossiakoff AA, Khelashvili G, Silver DL, Mancia F

EMDB-21685:
Structure of human GABA(B) receptor in an inactive state
Method: single particle / : Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR

PDB-6wiv:
Structure of human GABA(B) receptor in an inactive state
Method: single particle / : Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR

EMDB-21983:
Single-Particle Cryo-EM Structure of Arabinosyltransferase EmbB from Mycobacterium smegmatis
Method: single particle / : Tan YZ, Rodrigues J

PDB-6x0o:
Single-Particle Cryo-EM Structure of Arabinosyltransferase EmbB from Mycobacterium smegmatis
Method: single particle / : Tan YZ, Rodrigues J, Keener JE, Zheng RB, Brunton R, Kloss B, Giacometti SI, Rosario AL, Zhang L, Niederweis M, Clarke OB, Lowary TL, Marty MT, Archer M, Potter CS, Carragher B, Mancia F

EMDB-21580:
Single-Particle Cryo-EM Structure of Arabinofuranosyltransferase AftD from Mycobacteria
Method: single particle / : Tan YZ, Zhang L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more